Strain identifier
BacDive ID: 4275
Type strain: 
Species: Ectothiorhodospira mobilis
Strain Designation: EG-1
Strain history: <- A. Oren, EG-1, The 16S rRNA gene sequence X93482 may be unreliable
NCBI tax ID(s): 195064 (species)
version 8.1 (current version)
General
@ref: 1607
BacDive-ID: 4275
DSM-Number: 4180
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Ectothiorhodospira mobilis EG-1 is an anaerobe, mesophilic bacterium that was isolated from sulfur spring.
NCBI tax id
- NCBI tax id: 195064
- Matching level: species
strain history
- @ref: 1607
- history: <- A. Oren, EG-1, The 16S rRNA gene sequence X93482 may be unreliable
doi: 10.13145/bacdive4275.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Ectothiorhodospira
- species: Ectothiorhodospira mobilis
- full scientific name: Ectothiorhodospira mobilis Pelsh 1936 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Ectothiorhodospira marismortui
@ref: 1607
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Ectothiorhodospira
species: Ectothiorhodospira mobilis
full scientific name: Ectothiorhodospira mobilis Pelsh 1936 emend. Ventura et al. 2000
strain designation: EG-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 1607
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27; with strain-specific modifications) Composition: NaCl 100.0 g/l Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NH4Cl 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Resazurin 0.005 g/l Fe(III) citrate 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 1607
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1607
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1607
- sample type: sulfur spring
- geographic location: near Ein Gedi on the western shore of the Dead Sea
- country: Israel
- origin.country: ISR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_129553.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_56;96_1761;97_65006;98_86745;99_129553&stattab=map
- Last taxonomy: Ectothiorhodospira
- 16S sequence: HG970163
- Sequence Identity:
- Total samples: 31
- soil counts: 2
- aquatic counts: 28
- animal counts: 1
Safety information
risk assessment
- @ref: 1607
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 1607 | Ectothiorhodospira mobilis partial 16S rRNA gene, type strain DSM 4180T | HG970163 | 1518 | ena | 195064 |
| 1607 | Ectothiorhodospira mobilis 16S rRNA gene, strain DSM 4180 | X93482 | 1467 | ena | 195064 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ectothiorhodospira mobilis DSM 4180 | GCA_900114895 | contig | ncbi | 195064 |
| 66792 | Ectothiorhodospira mobilis strain DSM 4180 | 195064.5 | wgs | patric | 195064 |
| 66792 | Ectothiorhodospira marismortui DSM 4180 | 2671180234 | draft | img | 195064 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.362 | no |
| gram-positive | no | 98.771 | no |
| anaerobic | yes | 98.175 | yes |
| aerobic | no | 94.471 | no |
| halophile | no | 52.606 | no |
| spore-forming | no | 92.131 | no |
| glucose-util | no | 54.251 | no |
| flagellated | yes | 59.008 | no |
| thermophile | no | 93.652 | yes |
| glucose-ferment | no | 75.199 | no |
External links
@ref: 1607
culture collection no.: DSM 4180
straininfo link
- @ref: 73769
- straininfo: 42756
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1607 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4180) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4180 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73769 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42756.1 | StrainInfo: A central database for resolving microbial strain identifiers |