Strain identifier

BacDive ID: 4243

Type strain: No

Species: Dietzia maris

Strain Designation: 692-76, GH 1649

Strain history: CIP <- 1994, Lab. Ident. Inst. Pasteur, Paris, France: strain 692-76, Rhodococcus sp. <- 1976, Auxerre Hosp., Auxerre, France

NCBI tax ID(s): 37915 (species)

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General

@ref: 11798

BacDive-ID: 4243

DSM-Number: 44472

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Dietzia maris 692-76 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from human .

NCBI tax id

  • NCBI tax id: 37915
  • Matching level: species

strain history

@refhistory
11798<- G. Haase, RWTH, Aachen; GH 1649 <- Lab. Ident. Inst. Pasteur, Paris; 692-76 (Rhodococcus sp.) <- Auxerre Hospital
120823CIP <- 1994, Lab. Ident. Inst. Pasteur, Paris, France: strain 692-76, Rhodococcus sp. <- 1976, Auxerre Hosp., Auxerre, France

doi: 10.13145/bacdive4243.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Dietziaceae
  • genus: Dietzia
  • species: Dietzia maris
  • full scientific name: Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995
  • synonyms

    @refsynonym
    20215Dietzia cinnamea
    20215Rhodococcus maris

@ref: 11798

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dietziaceae

genus: Dietzia

species: Dietzia maris

full scientific name: Dietzia maris (Nesterenko et al. 1982) Rainey et al. 1995 emend. Nouioui et al. 2018

strain designation: 692-76, GH 1649

type strain: no

Morphology

cell morphology

  • @ref: 120823
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11798TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41103MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120823CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
120823CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
11798positivegrowth28
41103positivegrowth30
56339positivegrowth25-37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
56339aerobe
120823obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837928087glycogen-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837965327D-xylose-fermentation
683794853esculin-hydrolysis
6837917632nitrate-reduction
12082317632nitrate-reduction
12082316301nitrite-reduction
6837916988D-ribose-fermentation
6837917634D-glucose-fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis

metabolite production

  • @ref: 120823
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase-3.2.1.22
68382alpha-chymotrypsin-3.4.21.1
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase+3.1.3.1
120823oxidase-
120823catalase+1.11.1.6
120823urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56339C14:0214
    56339C15:01.615
    56339C16:026.816
    56339C17:03.417
    56339C18:00.818
    56339C15:0 ISO 3OH1.216.135
    56339C16:1 ω7c5.515.819
    56339C16:1 ω7c/C15:0 ISO 2OH7.415.85
    56339C17:1 ω9c2.116.773
    56339C17:1 ω9c ISO0.416.416
    56339C18:1 ω9c19.617.769
    56339C18:2 ω6,9c/C18:0 ANTE6.817.724
    56339C19:0 ANTEISO1.518.729
    56339TBSA 10Me18:04.318.392
    56339Unidentified0.614.275
    56339Unidentified7.716.292
    56339Unidentified1.417.297
    56339Unidentified118.045
    56339Unidentified5.118.089
    56339Unidentified0.918.306
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
56339---+----------------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
56339-+-+-+--------------
120823-+++-+-++-++---+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
11798human (knee artiular fluid)AuxerreFranceFRAEurope
56339Human knee articular fluidAuxerreFranceFRAEurope1976
120823Human, Knee articular fluidAuxerreFranceFRAEurope1976

isolation source categories

Cat1Cat2
#Host#Human
#Host Body Product#Fluids

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
11798yes, in single cases1Risk group (German classification)
1208231Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Dietzia sp. 16S rRNA gene, strain CIP104289
  • accession: Y08312
  • length: 1315
  • database: nuccore
  • NCBI tax ID: 70169

External links

@ref: 11798

culture collection no.: DSM 44472, CIP 104289, CCUG 44489

straininfo link

  • @ref: 73740
  • straininfo: 50641

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11798Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44472)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44472
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41103Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16181
56339Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 44489)https://www.ccug.se/strain?id=44489
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
73740Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50641.1StrainInfo: A central database for resolving microbial strain identifiers
120823Curators of the CIPCollection of Institut Pasteur (CIP 104289)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104289