Strain identifier
BacDive ID: 4243
Type strain:
Species: Dietzia maris
Strain Designation: 692-76, GH 1649
Strain history: CIP <- 1994, Lab. Ident. Inst. Pasteur, Paris, France: strain 692-76, Rhodococcus sp. <- 1976, Auxerre Hosp., Auxerre, France
NCBI tax ID(s): 37915 (species)
General
@ref: 11798
BacDive-ID: 4243
DSM-Number: 44472
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped
description: Dietzia maris 692-76 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from human .
NCBI tax id
- NCBI tax id: 37915
- Matching level: species
strain history
@ref | history |
---|---|
11798 | <- G. Haase, RWTH, Aachen; GH 1649 <- Lab. Ident. Inst. Pasteur, Paris; 692-76 (Rhodococcus sp.) <- Auxerre Hospital |
120823 | CIP <- 1994, Lab. Ident. Inst. Pasteur, Paris, France: strain 692-76, Rhodococcus sp. <- 1976, Auxerre Hosp., Auxerre, France |
doi: 10.13145/bacdive4243.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Dietziaceae
- genus: Dietzia
- species: Dietzia maris
- full scientific name: Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995
synonyms
@ref synonym 20215 Dietzia cinnamea 20215 Rhodococcus maris
@ref: 11798
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dietziaceae
genus: Dietzia
species: Dietzia maris
full scientific name: Dietzia maris (Nesterenko et al. 1982) Rainey et al. 1995 emend. Nouioui et al. 2018
strain designation: 692-76, GH 1649
type strain: no
Morphology
cell morphology
- @ref: 120823
- gram stain: positive
- cell shape: coccus-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
11798 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
41103 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
120823 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
120823 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
11798 | positive | growth | 28 |
41103 | positive | growth | 30 |
56339 | positive | growth | 25-37 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
56339 | aerobe |
120823 | obligate aerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68379 | 28087 | glycogen | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 17632 | nitrate | - | reduction |
120823 | 17632 | nitrate | - | reduction |
120823 | 16301 | nitrite | - | reduction |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 120823
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
120823 | oxidase | - | |
120823 | catalase | + | 1.11.1.6 |
120823 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 56339 C14:0 2 14 56339 C15:0 1.6 15 56339 C16:0 26.8 16 56339 C17:0 3.4 17 56339 C18:0 0.8 18 56339 C15:0 ISO 3OH 1.2 16.135 56339 C16:1 ω7c 5.5 15.819 56339 C16:1 ω7c/C15:0 ISO 2OH 7.4 15.85 56339 C17:1 ω9c 2.1 16.773 56339 C17:1 ω9c ISO 0.4 16.416 56339 C18:1 ω9c 19.6 17.769 56339 C18:2 ω6,9c/C18:0 ANTE 6.8 17.724 56339 C19:0 ANTEISO 1.5 18.729 56339 TBSA 10Me18:0 4.3 18.392 56339 Unidentified 0.6 14.275 56339 Unidentified 7.7 16.292 56339 Unidentified 1.4 17.297 56339 Unidentified 1 18.045 56339 Unidentified 5.1 18.089 56339 Unidentified 0.9 18.306 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
56339 | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
56339 | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
120823 | - | + | + | + | - | + | - | + | + | - | + | + | - | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
11798 | human (knee artiular fluid) | Auxerre | France | FRA | Europe | ||
56339 | Human knee articular fluid | Auxerre | France | FRA | Europe | 1976 | |
120823 | Human, Knee articular fluid | Auxerre | France | FRA | Europe | 1976 |
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Human |
#Host Body Product | #Fluids |
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
11798 | yes, in single cases | 1 | Risk group (German classification) |
120823 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Dietzia sp. 16S rRNA gene, strain CIP104289
- accession: Y08312
- length: 1315
- database: nuccore
- NCBI tax ID: 70169
External links
@ref: 11798
culture collection no.: DSM 44472, CIP 104289, CCUG 44489
straininfo link
- @ref: 73740
- straininfo: 50641
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11798 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44472) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44472 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41103 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16181 | ||||
56339 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 44489) | https://www.ccug.se/strain?id=44489 | |||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
73740 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50641.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120823 | Curators of the CIP | Collection of Institut Pasteur (CIP 104289) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104289 |