Strain identifier
BacDive ID: 4238
Type strain:
Species: Desulfuromonas svalbardensis
Strain Designation: 112
Strain history: V. Vandieken 112.
NCBI tax ID(s): 304413 (species)
General
@ref: 6669
BacDive-ID: 4238
DSM-Number: 16958
keywords: 16S sequence, Bacteria, anaerobe, chemoorganotroph, psychrophilic, Gram-negative, motile, rod-shaped
description: Desulfuromonas svalbardensis 112 is an anaerobe, chemoorganotroph, psychrophilic bacterium that was isolated from marine surface sediment.
NCBI tax id
- NCBI tax id: 304413
- Matching level: species
strain history
@ref | history |
---|---|
6669 | <- V. Vandieken, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; 112 <- V. Vandieken {2003} |
67770 | V. Vandieken 112. |
doi: 10.13145/bacdive4238.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Desulfuromonadaceae
- genus: Desulfuromonas
- species: Desulfuromonas svalbardensis
- full scientific name: Desulfuromonas svalbardensis Vandieken et al. 2006
@ref: 6669
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Desulfuromonadaceae
genus: Desulfuromonas
species: Desulfuromonas svalbardensis
full scientific name: Desulfuromonas svalbardensis Vandieken et al. 2006
strain designation: 112
type strain: yes
Morphology
cell morphology
- @ref: 23229
- gram stain: negative
- cell length: 2.5-3.0 µm
- cell width: 0.7 µm
- cell shape: rod-shaped
- motility: yes
- flagellum arrangement: peritrichous
Culture and growth conditions
culture medium
- @ref: 6669
- name: DESULFUROMUSA FERRIREDUCENS MEDIUM (DSMZ Medium 1041)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1041
- composition: Name: DESULFUROMUSA FERRIREDUCENS MEDIUM (DSMZ Medium 1041) Composition: Sea Salt 34.9301 g/l Na2-fumarate 3.19361 g/l NaHCO3 1.99601 g/l Na-acetate 1.59681 g/l Yeast extract 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l ZnSO4 x 7 H2O 0.00179641 g/l CoCl2 x 6 H2O 0.00179641 g/l FeSO4 x 7 H2O 0.000998004 g/l CaCl2 x 2 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6669 | positive | growth | 15 | psychrophilic |
23229 | positive | growth | -2.0-20 | psychrophilic |
23229 | positive | optimum | 14 | psychrophilic |
67770 | positive | growth | 14 | psychrophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
23229 | positive | growth | 6.5-7.5 |
23229 | positive | optimum | 7.3 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6669 | anaerobe |
23229 | anaerobe |
nutrition type
- @ref: 23229
- type: chemoorganotroph
observation
- @ref: 67770
- observation: quinones: MK-8
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23229 | 33403 | elemental sulfur | + | electron acceptor |
23229 | 29806 | fumarate | + | electron acceptor |
23229 | manganese dioxide | + | electron acceptor | |
23229 | 30089 | acetate | + | growth |
23229 | 28885 | butanol | + | growth |
23229 | 15354 | choline | + | growth |
23229 | 16236 | ethanol | + | growth |
23229 | 28831 | propanol | + | growth |
23229 | 17272 | propionate | + | growth |
23229 | 15361 | pyruvate | + | growth |
23229 | 30089 | acetate | + | oxidation |
23229 | 28885 | butanol | + | oxidation |
23229 | 15354 | choline | + | oxidation |
23229 | 16236 | ethanol | + | oxidation |
23229 | 28831 | propanol | + | oxidation |
23229 | 17272 | propionate | + | oxidation |
23229 | 15361 | pyruvate | + | oxidation |
23229 | 15956 | biotin | + | required for growth |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6669 | marine surface sediment | Svalbard | Norway | NOR | Europe |
23229 | permanently cold fjord sediment | west coast of Svalbard | |||
67770 | Arctic fjord sediment at the west coast of Svalbard |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
#Condition | #Psychrophilic (<10°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_26022.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_1951;97_15793;98_19544;99_26022&stattab=map
- Last taxonomy: Desulfuromonas svalbardensis subclade
- 16S sequence: AY835388
- Sequence Identity:
- Total samples: 346
- soil counts: 18
- aquatic counts: 324
- animal counts: 4
Safety information
risk assessment
- @ref: 6669
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6669
- description: Desulfuromonas svalbardensis strain 112 16S ribosomal RNA gene, partial sequence
- accession: AY835388
- length: 1516
- database: ena
- NCBI tax ID: 304413
GC content
@ref | GC-content |
---|---|
6669 | 52.3 |
23229 | 50.1 |
External links
@ref: 6669
culture collection no.: DSM 16958, JCM 12927
straininfo link
- @ref: 73735
- straininfo: 291126
literature
- topic: Metabolism
- Pubmed-ID: 16627667
- title: Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard.
- authors: Vandieken V, Mussmann M, Niemann H, Jorgensen BB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63639-0
- year: 2006
- mesh: Acetic Acid/metabolism, Arctic Regions, Bacterial Typing Techniques, Deltaproteobacteria/*classification/cytology/*isolation & purification/physiology, Fatty Acids/analysis/isolation & purification, Ferric Compounds/*metabolism, Formates/metabolism, Fumarates/metabolism, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen/metabolism, Lactic Acid/metabolism, Manganese/metabolism, Microscopy, Electron, Molecular Sequence Data, Movement, Oxidation-Reduction, Phylogeny, Propionates/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Sulfur/metabolism
- topic2: Phylogeny
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6669 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16958) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16958 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23229 | Verona Vandieken, Marc Mußmann, Helge Niemann, Bo Barker Jorgensen | 10.1099/ijs.0.63639-0 | Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard | IJSEM 56: 1133-1139 2006 | 16627667 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
73735 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291126.1 | StrainInfo: A central database for resolving microbial strain identifiers |