Strain identifier

BacDive ID: 4238

Type strain: Yes

Species: Desulfuromonas svalbardensis

Strain Designation: 112

Strain history: V. Vandieken 112.

NCBI tax ID(s): 304413 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6669

BacDive-ID: 4238

DSM-Number: 16958

keywords: 16S sequence, Bacteria, anaerobe, chemoorganotroph, psychrophilic, Gram-negative, motile, rod-shaped

description: Desulfuromonas svalbardensis 112 is an anaerobe, chemoorganotroph, psychrophilic bacterium that was isolated from marine surface sediment.

NCBI tax id

  • NCBI tax id: 304413
  • Matching level: species

strain history

@refhistory
6669<- V. Vandieken, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; 112 <- V. Vandieken {2003}
67770V. Vandieken 112.

doi: 10.13145/bacdive4238.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Desulfuromonadaceae
  • genus: Desulfuromonas
  • species: Desulfuromonas svalbardensis
  • full scientific name: Desulfuromonas svalbardensis Vandieken et al. 2006

@ref: 6669

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Desulfuromonadaceae

genus: Desulfuromonas

species: Desulfuromonas svalbardensis

full scientific name: Desulfuromonas svalbardensis Vandieken et al. 2006

strain designation: 112

type strain: yes

Morphology

cell morphology

  • @ref: 23229
  • gram stain: negative
  • cell length: 2.5-3.0 µm
  • cell width: 0.7 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

Culture and growth conditions

culture medium

  • @ref: 6669
  • name: DESULFUROMUSA FERRIREDUCENS MEDIUM (DSMZ Medium 1041)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1041
  • composition: Name: DESULFUROMUSA FERRIREDUCENS MEDIUM (DSMZ Medium 1041) Composition: Sea Salt 34.9301 g/l Na2-fumarate 3.19361 g/l NaHCO3 1.99601 g/l Na-acetate 1.59681 g/l Yeast extract 0.998004 g/l Na2S x 9 H2O 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l ZnSO4 x 7 H2O 0.00179641 g/l CoCl2 x 6 H2O 0.00179641 g/l FeSO4 x 7 H2O 0.000998004 g/l CaCl2 x 2 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Biotin 1.99601e-05 g/l Folic acid 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6669positivegrowth15psychrophilic
23229positivegrowth-2.0-20psychrophilic
23229positiveoptimum14psychrophilic
67770positivegrowth14psychrophilic

culture pH

@refabilitytypepH
23229positivegrowth6.5-7.5
23229positiveoptimum7.3

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6669anaerobe
23229anaerobe

nutrition type

  • @ref: 23229
  • type: chemoorganotroph

observation

  • @ref: 67770
  • observation: quinones: MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2322933403elemental sulfur+electron acceptor
2322929806fumarate+electron acceptor
23229manganese dioxide+electron acceptor
2322930089acetate+growth
2322928885butanol+growth
2322915354choline+growth
2322916236ethanol+growth
2322928831propanol+growth
2322917272propionate+growth
2322915361pyruvate+growth
2322930089acetate+oxidation
2322928885butanol+oxidation
2322915354choline+oxidation
2322916236ethanol+oxidation
2322928831propanol+oxidation
2322917272propionate+oxidation
2322915361pyruvate+oxidation
2322915956biotin+required for growth

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6669marine surface sedimentSvalbardNorwayNOREurope
23229permanently cold fjord sedimentwest coast of Svalbard
67770Arctic fjord sediment at the west coast of Svalbard

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Condition#Psychrophilic (<10°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_26022.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_1951;97_15793;98_19544;99_26022&stattab=map
  • Last taxonomy: Desulfuromonas svalbardensis subclade
  • 16S sequence: AY835388
  • Sequence Identity:
  • Total samples: 346
  • soil counts: 18
  • aquatic counts: 324
  • animal counts: 4

Safety information

risk assessment

  • @ref: 6669
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6669
  • description: Desulfuromonas svalbardensis strain 112 16S ribosomal RNA gene, partial sequence
  • accession: AY835388
  • length: 1516
  • database: ena
  • NCBI tax ID: 304413

GC content

@refGC-content
666952.3
2322950.1

External links

@ref: 6669

culture collection no.: DSM 16958, JCM 12927

straininfo link

  • @ref: 73735
  • straininfo: 291126

literature

  • topic: Metabolism
  • Pubmed-ID: 16627667
  • title: Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard.
  • authors: Vandieken V, Mussmann M, Niemann H, Jorgensen BB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63639-0
  • year: 2006
  • mesh: Acetic Acid/metabolism, Arctic Regions, Bacterial Typing Techniques, Deltaproteobacteria/*classification/cytology/*isolation & purification/physiology, Fatty Acids/analysis/isolation & purification, Ferric Compounds/*metabolism, Formates/metabolism, Fumarates/metabolism, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen/metabolism, Lactic Acid/metabolism, Manganese/metabolism, Microscopy, Electron, Molecular Sequence Data, Movement, Oxidation-Reduction, Phylogeny, Propionates/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Sulfur/metabolism
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6669Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16958)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16958
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23229Verona Vandieken, Marc Mußmann, Helge Niemann, Bo Barker Jorgensen10.1099/ijs.0.63639-0Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov., psychrophilic, Fe(III)-reducing bacteria isolated from Arctic sediments, SvalbardIJSEM 56: 1133-1139 200616627667
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73735Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291126.1StrainInfo: A central database for resolving microbial strain identifiers