Strain identifier

BacDive ID: 4236

Type strain: Yes

Species: Desulfuromonas chloroethenica

Strain Designation: TT4B

Strain history: <- ATCC <- L.R. Krumholz, TT4B

NCBI tax ID(s): 93716 (species)

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General

@ref: 4717

BacDive-ID: 4236

DSM-Number: 12431

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfuromonas chloroethenica TT4B is an anaerobe, mesophilic bacterium that was isolated from freshwater sediment contaminated with chlorinated ethylenes.

NCBI tax id

  • NCBI tax id: 93716
  • Matching level: species

strain history

  • @ref: 4717
  • history: <- ATCC <- L.R. Krumholz, TT4B

doi: 10.13145/bacdive4236.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Desulfuromonadaceae
  • genus: Desulfuromonas
  • species: Desulfuromonas chloroethenica
  • full scientific name: Desulfuromonas chloroethenica Krumholz 1997
  • synonyms

    • @ref: 20215
    • synonym: Trichloromonas chloroethenica

@ref: 4717

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Desulfuromonadaceae

genus: Desulfuromonas

species: Desulfuromonas chloroethenica

full scientific name: Desulfuromonas chloroethenica Krumholz 1997

strain designation: TT4B

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4717
  • name: DESULFUROMONAS CHLOROETHENICA MEDIUM (DSMZ Medium 835)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/835
  • composition: Name: DESULFUROMONAS CHLOROETHENICA MEDIUM (DSMZ Medium 835) Composition: Na2-fumarate 3.19043 g/l Na2CO3 1.74477 g/l KH2PO4 0.498504 g/l Na-acetate 0.408773 g/l NaCl 0.398804 g/l NH4Cl 0.398804 g/l MgCl2 x 6 H2O 0.299103 g/l Na2S x 9 H2O 0.249252 g/l L-Cysteine HCl x H2O 0.249252 g/l CaCl2 x 2 H2O 0.00997012 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 4717
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4717
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4717
  • sample type: freshwater sediment contaminated with chlorinated ethylenes
  • geographic location: eastern Massachusetts
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_38673.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_14327;97_22533;98_28355;99_38673&stattab=map
  • Last taxonomy: Desulfuromonas chloroethenica subclade
  • 16S sequence: NR_026012
  • Sequence Identity:
  • Total samples: 141
  • soil counts: 18
  • aquatic counts: 110
  • animal counts: 6
  • plant counts: 7

Safety information

risk assessment

  • @ref: 4717
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4717
  • description: Desulfuromonas chloroethenica strain TT4B 16S ribosomal RNA, partial sequence
  • accession: NR_026012
  • length: 1502
  • database: nuccore
  • NCBI tax ID: 93716

External links

@ref: 4717

culture collection no.: DSM 12431, ATCC 700295

straininfo link

  • @ref: 73733
  • straininfo: 43866

Reference

@idauthorscataloguedoi/urltitle
4717Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12431)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12431
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73733Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43866.1StrainInfo: A central database for resolving microbial strain identifiers