Strain identifier

BacDive ID: 4226

Type strain: Yes

Species: Desulfuromonas acetoxidans

Strain Designation: 11070, South Orkney Island

Strain history: <- N. Pfennig, 11070 ("South Orkney Island")

NCBI tax ID(s): 281689 (strain), 891 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 360

BacDive-ID: 4226

DSM-Number: 684

keywords: genome sequence, Bacteria, anaerobe, mesophilic, motile

description: Desulfuromonas acetoxidans 11070 is an anaerobe, mesophilic, motile bacterium that was isolated from marine sediment.

NCBI tax id

NCBI tax idMatching level
891species
281689strain

strain history

  • @ref: 360
  • history: <- N. Pfennig, 11070 ("South Orkney Island")

doi: 10.13145/bacdive4226.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Desulfuromonadaceae
  • genus: Desulfuromonas
  • species: Desulfuromonas acetoxidans
  • full scientific name: Desulfuromonas acetoxidans Pfennig and Biebl 1977 (Approved Lists 1980)

@ref: 360

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Desulfuromonadaceae

genus: Desulfuromonas

species: Desulfuromonas acetoxidans

full scientific name: Desulfuromonas acetoxidans Pfennig and Biebl 1977

strain designation: 11070, South Orkney Island

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.009
6948099.997negative

Culture and growth conditions

culture medium

  • @ref: 360
  • name: DESULFUROMONAS ACETOXIDANS MEDIUM (DSMZ Medium 95)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/95
  • composition: Name: DESULFUROMONAS ACETOXIDANS MEDIUM (DSMZ Medium 95) Composition: NaCl 19.9203 g/l Na2-DL-malate 2.64941 g/l MgCl2 x 6 H2O 1.99203 g/l NaHCO3 1.84263 g/l Na2SO4 1.76295 g/l MgSO4 x 7 H2O 0.996011 g/l KH2PO4 0.996011 g/l Yeast extract 0.498008 g/l Na2S x 9 H2O 0.298805 g/l NH4Cl 0.298804 g/l CaCl2 x 2 H2O 0.0996011 g/l Na2-EDTA x 2 H2O 0.00517928 g/l FeCl2 x 4 H2O 0.00149402 g/l Sodium resazurin 0.000498008 g/l CoCl2 x 6 H2O 0.000189243 g/l MnCl2 x 4 H2O 9.96016e-05 g/l ZnCl2 6.97211e-05 g/l Na2MoO4 x 2 H2O 3.58566e-05 g/l NiCl2 x 6 H2O 2.39044e-05 g/l H3BO3 5.9761e-06 g/l CuCl2 x 2 H2O 1.99203e-06 g/l Ethanol Distilled water

culture temp

  • @ref: 360
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
360anaerobe
69480anaerobe98.651

spore formation

@refspore formationconfidence
69481no100
69480no99.993

Isolation, sampling and environmental information

isolation

  • @ref: 360
  • sample type: marine sediment
  • geographic location: Antarctic ocean
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 360
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfuromonas acetoxidans DSM 684GCA_000167355scaffoldncbi281689
66792Desulfuromonas acetoxidans DSM 684281689.4wgspatric281689
66792Desulfuromonas acetoxidans DSM 684638341078draftimg281689

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.601no
flagellatedno50no
gram-positiveno98.926no
anaerobicyes99.083no
aerobicno95.388yes
halophileno53.926no
spore-formingno92.238no
thermophileno98.528yes
glucose-utilno53.952no
glucose-fermentno82.747no

External links

@ref: 360

culture collection no.: DSM 684

straininfo link

  • @ref: 73726
  • straininfo: 47257

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
16347897Betaine fermentation and oxidation by marine desulfuromonas strains.Heijthuijsen JH, Hansen TAAppl Environ Microbiol10.1128/aem.55.4.965-969.19891989
23143172Identification of a novel fosfomycin-resistant UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) from a soil metagenome.Cheng G, Hu Y, Lu N, Li J, Wang Z, Chen Q, Zhu BBiotechnol Lett10.1007/s10529-012-1074-52012MetabolismAlkyl and Aryl Transferases/genetics/isolation & purification/*metabolism, Anti-Bacterial Agents/*pharmacology, Catalytic Domain/genetics, Desulfuromonas/genetics, *Drug Resistance, Bacterial, Escherichia coli/*drug effects/genetics, Fosfomycin/*pharmacology, *Metagenome, Microbial Sensitivity Tests, Mutagenesis, Site-Directed, Mutant Proteins/genetics/metabolism, Sequence Homology, Amino Acid, *Soil MicrobiologyEnzymology
25505896Genomic analyses of bacterial porin-cytochrome gene clusters.Shi L, Fredrickson JK, Zachara JMFront Microbiol10.3389/fmicb.2014.006572014

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
360Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 684)https://www.dsmz.de/collection/catalogue/details/culture/DSM-684
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73726Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47257.1StrainInfo: A central database for resolving microbial strain identifiers