Strain identifier
BacDive ID: 4226
Type strain:
Species: Desulfuromonas acetoxidans
Strain Designation: 11070, South Orkney Island
Strain history: <- N. Pfennig, 11070 ("South Orkney Island")
NCBI tax ID(s): 281689 (strain), 891 (species)
General
@ref: 360
BacDive-ID: 4226
DSM-Number: 684
keywords: genome sequence, Bacteria, anaerobe, mesophilic, motile
description: Desulfuromonas acetoxidans 11070 is an anaerobe, mesophilic, motile bacterium that was isolated from marine sediment.
NCBI tax id
NCBI tax id | Matching level |
---|---|
891 | species |
281689 | strain |
strain history
- @ref: 360
- history: <- N. Pfennig, 11070 ("South Orkney Island")
doi: 10.13145/bacdive4226.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Desulfuromonadaceae
- genus: Desulfuromonas
- species: Desulfuromonas acetoxidans
- full scientific name: Desulfuromonas acetoxidans Pfennig and Biebl 1977 (Approved Lists 1980)
@ref: 360
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Desulfuromonadaceae
genus: Desulfuromonas
species: Desulfuromonas acetoxidans
full scientific name: Desulfuromonas acetoxidans Pfennig and Biebl 1977
strain designation: 11070, South Orkney Island
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 94.009 | |
69480 | 99.997 | negative |
Culture and growth conditions
culture medium
- @ref: 360
- name: DESULFUROMONAS ACETOXIDANS MEDIUM (DSMZ Medium 95)
- growth: yes
- link: https://mediadive.dsmz.de/medium/95
- composition: Name: DESULFUROMONAS ACETOXIDANS MEDIUM (DSMZ Medium 95) Composition: NaCl 19.9203 g/l Na2-DL-malate 2.64941 g/l MgCl2 x 6 H2O 1.99203 g/l NaHCO3 1.84263 g/l Na2SO4 1.76295 g/l MgSO4 x 7 H2O 0.996011 g/l KH2PO4 0.996011 g/l Yeast extract 0.498008 g/l Na2S x 9 H2O 0.298805 g/l NH4Cl 0.298804 g/l CaCl2 x 2 H2O 0.0996011 g/l Na2-EDTA x 2 H2O 0.00517928 g/l FeCl2 x 4 H2O 0.00149402 g/l Sodium resazurin 0.000498008 g/l CoCl2 x 6 H2O 0.000189243 g/l MnCl2 x 4 H2O 9.96016e-05 g/l ZnCl2 6.97211e-05 g/l Na2MoO4 x 2 H2O 3.58566e-05 g/l NiCl2 x 6 H2O 2.39044e-05 g/l H3BO3 5.9761e-06 g/l CuCl2 x 2 H2O 1.99203e-06 g/l Ethanol Distilled water
culture temp
- @ref: 360
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
360 | anaerobe | |
69480 | anaerobe | 98.651 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.993 |
Isolation, sampling and environmental information
isolation
- @ref: 360
- sample type: marine sediment
- geographic location: Antarctic ocean
- continent: Australia and Oceania
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 360
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Desulfuromonas acetoxidans DSM 684 | GCA_000167355 | scaffold | ncbi | 281689 |
66792 | Desulfuromonas acetoxidans DSM 684 | 281689.4 | wgs | patric | 281689 |
66792 | Desulfuromonas acetoxidans DSM 684 | 638341078 | draft | img | 281689 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.601 | no |
flagellated | no | 50 | no |
gram-positive | no | 98.926 | no |
anaerobic | yes | 99.083 | no |
aerobic | no | 95.388 | yes |
halophile | no | 53.926 | no |
spore-forming | no | 92.238 | no |
thermophile | no | 98.528 | yes |
glucose-util | no | 53.952 | no |
glucose-ferment | no | 82.747 | no |
External links
@ref: 360
culture collection no.: DSM 684
straininfo link
- @ref: 73726
- straininfo: 47257
literature
Pubmed-ID | title | authors | journal | DOI | year | topic | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
16347897 | Betaine fermentation and oxidation by marine desulfuromonas strains. | Heijthuijsen JH, Hansen TA | Appl Environ Microbiol | 10.1128/aem.55.4.965-969.1989 | 1989 | |||
23143172 | Identification of a novel fosfomycin-resistant UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) from a soil metagenome. | Cheng G, Hu Y, Lu N, Li J, Wang Z, Chen Q, Zhu B | Biotechnol Lett | 10.1007/s10529-012-1074-5 | 2012 | Metabolism | Alkyl and Aryl Transferases/genetics/isolation & purification/*metabolism, Anti-Bacterial Agents/*pharmacology, Catalytic Domain/genetics, Desulfuromonas/genetics, *Drug Resistance, Bacterial, Escherichia coli/*drug effects/genetics, Fosfomycin/*pharmacology, *Metagenome, Microbial Sensitivity Tests, Mutagenesis, Site-Directed, Mutant Proteins/genetics/metabolism, Sequence Homology, Amino Acid, *Soil Microbiology | Enzymology |
25505896 | Genomic analyses of bacterial porin-cytochrome gene clusters. | Shi L, Fredrickson JK, Zachara JM | Front Microbiol | 10.3389/fmicb.2014.00657 | 2014 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
360 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 684) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-684 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
73726 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47257.1 | StrainInfo: A central database for resolving microbial strain identifiers |