Strain identifier

BacDive ID: 4214

Type strain: No

Species: Syntrophotalea acetylenica

Strain Designation: GhAcy 1

Strain history: <- B. Schink, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; GhAcy 1

NCBI tax ID(s): 29542 (species)

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General

@ref: 1327

BacDive-ID: 4214

DSM-Number: 3247

keywords: genome sequence, Bacteria, anaerobe, mesophilic

description: Syntrophotalea acetylenica GhAcy 1 is an anaerobe, mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 29542
  • Matching level: species

strain history

  • @ref: 1327
  • history: <- B. Schink, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; GhAcy 1

doi: 10.13145/bacdive4214.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Syntrophotaleaceae
  • genus: Syntrophotalea
  • species: Syntrophotalea acetylenica
  • full scientific name: Syntrophotalea acetylenica (Schink 1986) Waite et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Pelobacter acetylenicus

@ref: 1327

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Syntrophotaleaceae

genus: Syntrophotalea

species: Syntrophotalea acetylenica

full scientific name: Syntrophotalea acetylenica (Schink 1986) Waite et al. 2020

strain designation: GhAcy 1

type strain: no

Culture and growth conditions

culture medium

  • @ref: 1327
  • name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/293
  • composition: Name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293; with strain-specific modifications) Composition: NaCl 19.98 g/l MgCl2 x 6 H2O 2.997 g/l Na2CO3 1.24875 g/l None 0.999001 g/l KCl 0.499501 g/l Na2S x 9 H2O 0.35964 g/l NH4Cl 0.24975 g/l KH2PO4 0.1998 g/l CaCl2 x 2 H2O 0.14985 g/l HCl 0.0024975 g/l FeCl2 x 4 H2O 0.0014985 g/l Sodium resazurin 0.0004995 g/l CoCl2 x 6 H2O 0.00018981 g/l MnCl2 x 4 H2O 9.99001e-05 g/l ZnCl2 6.99301e-05 g/l Na2MoO4 x 2 H2O 3.5964e-05 g/l NiCl2 x 6 H2O 2.3976e-05 g/l H3BO3 5.99401e-06 g/l CuCl2 x 2 H2O 1.998e-06 g/l Distilled water

culture temp

  • @ref: 1327
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1327
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1327
  • sample type: marine sediment
  • geographic location: Venice
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 1327
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Syntrophotalea acetylenica DSM 3247GCA_001887715chromosomencbi29542
66792Pelobacter acetylenicus strain DSM 324729542.4completepatric29542
66792Pelobacter acetylenicus DSM 32472718217954completeimg29542

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.719no
anaerobicyes98.466yes
halophileno68.473no
spore-formingno94.816no
glucose-utilno50no
flagellatedno66.598no
thermophileno84.501yes
aerobicno96.661yes
motileyes83.337no
glucose-fermentno78.263no

External links

@ref: 1327

culture collection no.: DSM 3247

straininfo link

  • @ref: 73714
  • straininfo: 47707

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics28183759Complete Genome Sequences of Two Acetylene-Fermenting Pelobacter acetylenicus Strains.Sutton JM, Baesman SM, Fierst JL, Poret-Peterson AT, Oremland RS, Dunlap DS, Akob DMGenome Announc10.1128/genomeA.01572-162017
Metabolism28667109Detection of Diazotrophy in the Acetylene-Fermenting Anaerobe Pelobacter sp. Strain SFB93.Akob DM, Baesman SM, Sutton JM, Fierst JL, Mumford AC, Shrestha Y, Poret-Peterson AT, Bennett S, Dunlap DS, Haase KB, Oremland RSAppl Environ Microbiol10.1128/AEM.01198-172017Acetylene/*metabolism, Anaerobiosis, Bacterial Proteins/genetics/metabolism, Deltaproteobacteria/enzymology/genetics/growth & development/*metabolism, Fermentation, Genome, Bacterial, Hydro-Lyases/genetics/metabolism, Molybdenum/metabolism, Nitrogen Fixation, Nitrogenase/genetics/metabolism, PhylogenyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1327Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3247)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3247
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
73714Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47707.1StrainInfo: A central database for resolving microbial strain identifiers