Strain identifier
BacDive ID: 4197
Type strain:
Species: Desulfurococcus mucosus
Strain Designation: Hvv 3/9
Strain history: DSM 2161 <-- W. Zillig Hvv 3/9.
NCBI tax ID(s): 675631 (strain), 2275 (species)
General
@ref: 986
BacDive-ID: 4197
DSM-Number: 2161
keywords: genome sequence, 16S sequence, Archaea, anaerobe, spore-forming, hyperthermophilic, Gram-negative
description: Desulfurococcus mucosus Hvv 3/9 is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from acidic water from solfataric field.
NCBI tax id
NCBI tax id | Matching level |
---|---|
675631 | strain |
2275 | species |
strain history
@ref | history |
---|---|
986 | <- W. Zillig, Hvv 3/9 |
67770 | DSM 2161 <-- W. Zillig Hvv 3/9. |
doi: 10.13145/bacdive4197.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Desulfurococcales
- family: Desulfurococcaceae
- genus: Desulfurococcus
- species: Desulfurococcus mucosus
- full scientific name: Desulfurococcus mucosus Zillig and Stetter 1983
synonyms
- @ref: 20215
- synonym: Desulfurococcus mobilis
@ref: 986
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Desulfurococcales
family: Desulfurococcaceae
genus: Desulfurococcus
species: Desulfurococcus mucosus
full scientific name: Desulfurococcus mucosus Zillig and Stetter 1983 emend. Perevalova et al. 2016
strain designation: Hvv 3/9
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.959
Culture and growth conditions
culture medium
- @ref: 986
- name: SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/88a
- composition: Name: SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a; with strain-specific modifications) Composition: Sulfur 10.0 g/l (NH4)2SO4 1.3 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.28 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.07 g/l FeCl3 x 6 H2O 0.02 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l VOSO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 1e-05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
986 | positive | growth | 85 | hyperthermophilic | |
67770 | positive | growth | 85 | hyperthermophilic | |
69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
986 | anaerobe | |
69480 | anaerobe | 99.683 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 95 |
69480 | no | 99.97 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
986 | acidic water from solfataric field | Hveravellir | Iceland | ISL | Europe |
67770 | Acidic hot spring in Hveravellir | Iceland | ISL | Europe |
isolation source categories
Cat1 | Cat2 |
---|---|
#Environmental | #Aquatic |
#Condition | #Acidic |
#Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_187162.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17883;96_68795;97_89437;98_121753;99_187162&stattab=map
- Last taxonomy: Desulfurococcus mucosus subclade
- 16S sequence: M36474
- Sequence Identity:
- Total samples: 20
- aquatic counts: 16
- animal counts: 4
Safety information
risk assessment
- @ref: 986
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 986
- description: D.mobilis ribosomal 16S RNA gene
- accession: M36474
- length: 1650
- database: ena
- NCBI tax ID: 2275
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Desulfurococcus mobilis DSM 2161 | 2513237118 | draft | img | 675631 |
67770 | Desulfurococcus mucosus DSM 2161 | GCA_001006085 | scaffold | ncbi | 675631 |
66792 | Desulfurococcus mobilis DSM 2161 | 675631.5 | wgs | patric | 675631 |
GC content
- @ref: 67770
- GC-content: 50.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
- trait: spore-forming
- prediction: yes
- confidence: 95
- training_data: no
External links
@ref: 986
culture collection no.: DSM 2161, ATCC 35582, JCM 9186
straininfo link
- @ref: 73697
- straininfo: 93022
literature
- topic: Genetics
- Pubmed-ID: 26767090
- title: Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.
- authors: Susanti D, Johnson EF, Lapidus A, Han J, Reddy TB, Pilay M, Ivanova NN, Markowitz VM, Woyke T, Kyrpides NC, Mukhopadhyay B
- journal: Stand Genomic Sci
- DOI: 10.1186/s40793-015-0128-4
- year: 2016
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
986 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2161) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2161 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
73697 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID93022.1 | StrainInfo: A central database for resolving microbial strain identifiers |