Strain identifier

BacDive ID: 4197

Type strain: No

Species: Desulfurococcus mucosus

Strain Designation: Hvv 3/9

Strain history: DSM 2161 <-- W. Zillig Hvv 3/9.

NCBI tax ID(s): 675631 (strain), 2275 (species)

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General

@ref: 986

BacDive-ID: 4197

DSM-Number: 2161

keywords: genome sequence, 16S sequence, Archaea, anaerobe, spore-forming, hyperthermophilic, Gram-negative

description: Desulfurococcus mucosus Hvv 3/9 is an anaerobe, spore-forming, hyperthermophilic archaeon that was isolated from acidic water from solfataric field.

NCBI tax id

NCBI tax idMatching level
675631strain
2275species

strain history

@refhistory
986<- W. Zillig, Hvv 3/9
67770DSM 2161 <-- W. Zillig Hvv 3/9.

doi: 10.13145/bacdive4197.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/thermoproteota
  • domain: Archaea
  • phylum: Thermoproteota
  • class: Thermoprotei
  • order: Desulfurococcales
  • family: Desulfurococcaceae
  • genus: Desulfurococcus
  • species: Desulfurococcus mucosus
  • full scientific name: Desulfurococcus mucosus Zillig and Stetter 1983
  • synonyms

    • @ref: 20215
    • synonym: Desulfurococcus mobilis

@ref: 986

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Desulfurococcales

family: Desulfurococcaceae

genus: Desulfurococcus

species: Desulfurococcus mucosus

full scientific name: Desulfurococcus mucosus Zillig and Stetter 1983 emend. Perevalova et al. 2016

strain designation: Hvv 3/9

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.959

Culture and growth conditions

culture medium

  • @ref: 986
  • name: SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/88a
  • composition: Name: SULFOLOBUS MEDIUM (ANAEROBIC) (DSMZ Medium 88a; with strain-specific modifications) Composition: Sulfur 10.0 g/l (NH4)2SO4 1.3 g/l Yeast extract 1.0 g/l Na2S x 9 H2O 0.5 g/l KH2PO4 0.28 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.07 g/l FeCl3 x 6 H2O 0.02 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l VOSO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 1e-05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerangeconfidence
986positivegrowth85hyperthermophilic
67770positivegrowth85hyperthermophilic
69480thermophilic99.999

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
986anaerobe
69480anaerobe99.683

spore formation

@refspore formationconfidence
69481yes95
69480no99.97

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
986acidic water from solfataric fieldHveravellirIcelandISLEurope
67770Acidic hot spring in HveravellirIcelandISLEurope

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Condition#Acidic
#Condition#Sulfuric

taxonmaps

  • @ref: 69479
  • File name: preview.99_187162.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17883;96_68795;97_89437;98_121753;99_187162&stattab=map
  • Last taxonomy: Desulfurococcus mucosus subclade
  • 16S sequence: M36474
  • Sequence Identity:
  • Total samples: 20
  • aquatic counts: 16
  • animal counts: 4

Safety information

risk assessment

  • @ref: 986
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 986
  • description: D.mobilis ribosomal 16S RNA gene
  • accession: M36474
  • length: 1650
  • database: ena
  • NCBI tax ID: 2275

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfurococcus mobilis DSM 21612513237118draftimg675631
67770Desulfurococcus mucosus DSM 2161GCA_001006085scaffoldncbi675631
66792Desulfurococcus mobilis DSM 2161675631.5wgspatric675631

GC content

  • @ref: 67770
  • GC-content: 50.8
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: yes
  • confidence: 95
  • training_data: no

External links

@ref: 986

culture collection no.: DSM 2161, ATCC 35582, JCM 9186

straininfo link

  • @ref: 73697
  • straininfo: 93022

literature

  • topic: Genetics
  • Pubmed-ID: 26767090
  • title: Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.
  • authors: Susanti D, Johnson EF, Lapidus A, Han J, Reddy TB, Pilay M, Ivanova NN, Markowitz VM, Woyke T, Kyrpides NC, Mukhopadhyay B
  • journal: Stand Genomic Sci
  • DOI: 10.1186/s40793-015-0128-4
  • year: 2016

Reference

@idauthorscataloguedoi/urltitle
986Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2161)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2161
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73697Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID93022.1StrainInfo: A central database for resolving microbial strain identifiers