Strain identifier

BacDive ID: 4196

Type strain: Yes

Species: Aeropyrum camini

Strain Designation: SY1

Culture col. no.: DSM 16960, ATCC BAA 758, JCM 12091

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General

@ref: 6671

BacDive-ID: 4196

DSM-Number: 16960

keywords: gram-negative, hyperthermophilic, heterotroph, aerobe, Archaea, 16S sequence, genome sequence, motile, coccus-shaped, colony-forming

description: Aeropyrum camini SY1 is an aerobe, heterotroph, hyperthermophilic archaeon that forms irregular colonies and was isolated from deep-sea hydrothermal vent chimney, 1385 m depth.

strain history: <- JCM <- S. Nakagawa, Kyoto Univ., Japan; SY1

doi: 10.13145/bacdive4196.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/crenarchaeota
  • domain: Archaea
  • phylum: Crenarchaeota
  • class: Thermoprotei
  • order: Desulfurococcales
  • family: Desulfurococcaceae
  • genus: Aeropyrum
  • species: Aeropyrum camini
  • full scientific name: Aeropyrum camini Nakagawa et al. 2004

@ref: 6671

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Desulfurococcales

family: Desulfurococcaceae

genus: Aeropyrum

species: Aeropyrum camini

full scientific name: Aeropyrum camini Nakagawa et al. 2004

strain designation: SY1

type strain: yes

Morphology

cell morphology

  • @ref: 23223
  • gram stain: negative
  • cell length: 1.2-2.1 µm
  • cell shape: coccus-shaped
  • motility: yes

colony morphology

  • @ref: 23223
  • colony shape: irregular

Culture and growth conditions

culture medium

  • @ref: 6671
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

@refgrowthtypetemperaturerange
6671positivegrowth85hyperthermophilic
23223positivegrowth70-97hyperthermophilic
23223positiveoptimum85hyperthermophilic

culture pH

@refabilitytypepH
23223positivegrowth6.5-8.8
23223positiveoptimum8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 23223
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23223
  • type: heterotroph

metabolite utilization

@refmetaboliteutilization activitykind of utilization tested
23223tryptone+carbon source
23223yeast extract+carbon source
23223tryptone+energy source
23223yeast extract+energy source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
6671deep-sea hydrothermal vent chimney, 1385 m depthPacific Ocean, Izu-Bonin Arc, Suiyo SeamountJapanJPNAsia
23223deep-sea hydrothermal vent chimneyIzu-Bonin ArcJapanJPNAsia28.5714140.644

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Aquatic#Marine
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 6671
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6671
  • description: Aeropyrum camini gene for 16S rRNA, partial sequence
  • accession: AB109559
  • length: 1562
  • database: ena
  • NCBI tax ID: 1198449

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeropyrum camini SY1 = JCM 12091GCA_000591035completencbi1198449
66792Aeropyrum camini SY1 = JCM 12091GCA_001316065contigncbi1198449
66792Aeropyrum camini SY1 = JCM 120911198449.6completepatric1198449
66792Aeropyrum camini SY1 = JCM 120911198449.12wgspatric1198449

GC content

@refGC-contentmethod
667154.4high performance liquid chromatography (HPLC)
2322354.4

External links

@ref: 6671

culture collection no.: DSM 16960, ATCC BAA 758, JCM 12091

straininfo link

@refpassport
20218http://www.straininfo.net/strains/382635
20218http://www.straininfo.net/strains/377558
20218http://www.straininfo.net/strains/377559

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6671Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16960)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16960
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23223Satoshi Nakagawa, Ken Takai, Koki Horikoshi, Yoshihiko Sako10.1099/ijs.0.02826-0Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimneyIJSEM 54: 329-335 2004
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)