Strain identifier

BacDive ID: 4196

Type strain: Yes

Species: Aeropyrum camini

Strain Designation: SY1

Strain history: S. Nakagawa SY1.

NCBI tax ID(s): 1198449 (strain), 229980 (species)

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General

@ref: 6671

BacDive-ID: 4196

DSM-Number: 16960

keywords: genome sequence, 16S sequence, Archaea, aerobe, heterotroph, hyperthermophilic, Gram-negative, motile, coccus-shaped, colony-forming

description: Aeropyrum camini SY1 is an aerobe, heterotroph, hyperthermophilic archaeon that forms irregular colonies and was isolated from deep-sea hydrothermal vent chimney, 1385 m depth.

NCBI tax id

NCBI tax idMatching level
229980species
1198449strain

strain history

@refhistory
6671<- JCM <- S. Nakagawa, Kyoto Univ., Japan; SY1
67770S. Nakagawa SY1.

doi: 10.13145/bacdive4196.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/thermoproteota
  • domain: Archaea
  • phylum: Thermoproteota
  • class: Thermoprotei
  • order: Desulfurococcales
  • family: Desulfurococcaceae
  • genus: Aeropyrum
  • species: Aeropyrum camini
  • full scientific name: Aeropyrum camini Nakagawa et al. 2004

@ref: 6671

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Desulfurococcales

family: Desulfurococcaceae

genus: Aeropyrum

species: Aeropyrum camini

full scientific name: Aeropyrum camini Nakagawa et al. 2004

strain designation: SY1

type strain: yes

Morphology

cell morphology

  • @ref: 23223
  • gram stain: negative
  • cell length: 1.2-2.1 µm
  • cell shape: coccus-shaped
  • motility: yes

colony morphology

  • @ref: 23223
  • colony shape: irregular

Culture and growth conditions

culture medium

  • @ref: 6671
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6671positivegrowth85hyperthermophilic
23223positivegrowth70-97hyperthermophilic
23223positiveoptimum85hyperthermophilic
67770positivegrowth85hyperthermophilic

culture pH

@refabilitytypepHPH range
23223positivegrowth6.5-8.8alkaliphile
23223positiveoptimum8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 23223
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23223
  • type: heterotroph

metabolite utilization

@refmetaboliteutilization activitykind of utilization tested
23223tryptone+carbon source
23223yeast extract+carbon source
23223tryptone+energy source
23223yeast extract+energy source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
6671deep-sea hydrothermal vent chimney, 1385 m depthPacific Ocean, Izu-Bonin Arc, Suiyo SeamountJapanJPNAsia
23223deep-sea hydrothermal vent chimneyIzu-Bonin ArcJapanJPNAsia28.5714140.644
67770Deep-sea hydrothermal vent chimneySuiyo Seamount in Izu-Bonin ArcJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Environmental#Aquatic#Marine
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 6671
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6671
  • description: Aeropyrum camini gene for 16S rRNA, partial sequence
  • accession: AB109559
  • length: 1562
  • database: ena
  • NCBI tax ID: 1198449

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeropyrum camini SY1 = JCM 12091GCA_000591035completencbi1198449
66792Aeropyrum camini SY1, JCM 120912554235461completeimg1198449
66792Aeropyrum camini SY1, JCM 120912675903482draftimg1198449
67770Aeropyrum camini SY1 = JCM 12091GCA_001316065contigncbi1198449
66792Aeropyrum camini SY1 = JCM 120911198449.6completepatric1198449
66792Aeropyrum camini SY1 = JCM 120911198449.12wgspatric1198449

GC content

@refGC-contentmethod
667154.4high performance liquid chromatography (HPLC)
2322354.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno56.213yes
flagellatedno94.192no
gram-positiveno96.009yes
anaerobicyes69.643no
halophileno58.381no
spore-formingno96.788no
glucose-utilyes80.188no
aerobicno66.679yes
thermophileyes99.999no
glucose-fermentno79.392no

External links

@ref: 6671

culture collection no.: DSM 16960, ATCC BAA 758, JCM 12091

straininfo link

  • @ref: 73696
  • straininfo: 131409

literature

  • topic: Phylogeny
  • Pubmed-ID: 15023940
  • title: Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney.
  • authors: Nakagawa S, Takai K, Horikoshi K, Sako Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02826-0
  • year: 2004
  • mesh: Aerobiosis, Aeropyrum/*classification/genetics/growth & development/*isolation & purification, DNA, Bacterial/genetics/isolation & purification, DNA, Ribosomal/genetics, Japan, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Species Specificity, Temperature
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6671Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16960)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16960
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23223Satoshi Nakagawa, Ken Takai, Koki Horikoshi, Yoshihiko Sako10.1099/ijs.0.02826-0Aeropyrum camini sp. nov., a strictly aerobic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimneyIJSEM 54: 329-335 200415023940
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
73696Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID131409.1StrainInfo: A central database for resolving microbial strain identifiers