Strain identifier
BacDive ID: 4187
Type strain: 
Species: Hippea jasoniae
Strain Designation: Mar08-272r
Strain history: <- A.-L. Reysenbach, Portland State Univ., USA; Mar08-272r <- Y. Liu {2009}
NCBI tax ID(s): 944479 (species)
version 8.1 (current version)
General
@ref: 17700
BacDive-ID: 4187
DSM-Number: 24585
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative, rod-shaped
description: Hippea jasoniae Mar08-272r is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from hydrothermal vent deposit, depth 1624 m.
NCBI tax id
- NCBI tax id: 944479
- Matching level: species
strain history
- @ref: 17700
- history: <- A.-L. Reysenbach, Portland State Univ., USA; Mar08-272r <- Y. Liu {2009}
doi: 10.13145/bacdive4187.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfurellales
- family: Desulfurellaceae
- genus: Hippea
- species: Hippea jasoniae
- full scientific name: Hippea jasoniae Flores et al. 2012
@ref: 17700
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfurellales
family: Desulfurellaceae
genus: Hippea
species: Hippea jasoniae
full scientific name: Hippea jasoniae Flores et al. 2012
strain designation: Mar08-272r
type strain: yes
Morphology
cell morphology
- @ref: 30302
- gram stain: negative
- cell length: 2.75 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
Culture and growth conditions
culture medium
- @ref: 17700
- name: HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1360
- composition: Name: HIPPEA JASONIAE MEDIUM (DSMZ Medium 1360) Composition: NaCl 26.0435 g/l Sulfur 9.8912 g/l Trisodium citrate x 2 H2O 2.90801 g/l MgCl2 x 6 H2O 1.48368 g/l (NH4)2SO4 1.28586 g/l Na-acetate 1.2364 g/l Na2S x 9 H2O 0.49456 g/l Yeast extract 0.49456 g/l KCl 0.445104 g/l KH2PO4 0.276954 g/l MgSO4 x 7 H2O 0.24728 g/l CaCl2 x 2 H2O 0.0692384 g/l FeCl3 x 6 H2O 0.0197824 g/l Na2B4O7 x 10 H2O 0.00445104 g/l MnCl2 x 4 H2O 0.00178042 g/l Sodium resazurin 0.00049456 g/l ZnSO4 x 7 H2O 0.000217606 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Nicotinic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l CuCl2 x 2 H2O 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l VOSO4 x 2 H2O 2.96736e-05 g/l Na2MoO4 x 2 H2O 2.96736e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l CoSO4 x 7 H2O 9.8912e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17700 | positive | growth | 65 | thermophilic |
| 30302 | positive | growth | 40-72 | thermophilic |
| 30302 | positive | optimum | 62.5 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30302 | positive | growth | 3.5-5 | acidophile |
| 30302 | positive | optimum | 4.75 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 17700 | anaerobe |
| 30302 | anaerobe |
halophily
- @ref: 30302
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 1-6 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30302 | 30089 | acetate | + | carbon source |
| 30302 | 17272 | propionate | + | carbon source |
| 30302 | 30031 | succinate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 17700
- sample type: hydrothermal vent deposit, depth 1624 m
- geographic location: Atlantic Ocean, Mid-Atlantic Ridge, Lucky Strike hydrothermal vent field
- country: Portugal
- origin.country: PRT
- continent: Europe
- latitude: 37.2921
- longitude: -32.2751
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_9745.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16072;96_2761;97_3397;98_4285;99_9745&stattab=map
- Last taxonomy: Hippea jasoniae subclade
- 16S sequence: FR754498
- Sequence Identity:
- Total samples: 12
- soil counts: 2
- aquatic counts: 9
- animal counts: 1
Safety information
risk assessment
- @ref: 17700
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 30302 | Hippea sp. Mar08-368r partial 16S rRNA gene, strain Mar08-368r | FR754496 | 1609 | nuccore | 944323 |
| 17700 | Hippea jasoniae partial 16S rRNA gene, strain Mar08-272r | FR754498 | 1670 | ena | 944479 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hippea jasoniae Mar08-272r | GCA_000744435 | contig | ncbi | 944479 |
| 66792 | Hippea jasoniae Mar08-272r | 2582581238 | draft | img | 944479 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 17700 | 35.6 | thermal denaturation, midpoint method (Tm) |
| 30302 | 35.6 |
External links
@ref: 17700
culture collection no.: DSM 24585, OCM 985
straininfo link
- @ref: 73687
- straininfo: 401734
literature
- topic: Phylogeny
- Pubmed-ID: 21764980
- title: Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits.
- authors: Flores GE, Hunter RC, Liu Y, Mets A, Schouten S, Reysenbach AL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.033001-0
- year: 2011
- mesh: Acids/*metabolism, Base Composition, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Hot Temperature, Hydrothermal Vents/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17700 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24585) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24585 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30302 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26643 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73687 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401734.1 | StrainInfo: A central database for resolving microbial strain identifiers |