Archive BacDiveID:10.13145/bacdive4184.20230509.8.1

Strain identifier

BacDive ID: 4184

Type strain:

Species: Hippea maritima

Strain Designation: MH2, MH₂

Strain history: <- M. L. Miroshnichenko; MH₂ <- M. L. Miroshnichenko {1995}

NCBI tax ID(s): 760142 (strain), 84405 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 3935

BacDive-ID: 4184

DSM-Number: 10411

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative

description: Hippea maritima MH2 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from marine sediment from hot vent of tidal zone.

NCBI tax id

NCBI tax id	Matching level
760142	strain
84405	species

strain history

@ref: 3935
history: <- M. L. Miroshnichenko; MH₂ <- M. L. Miroshnichenko {1995}

doi: 10.13145/bacdive4184.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfurellales
family: Desulfurellaceae
genus: Hippea
species: Hippea maritima
full scientific name: Hippea maritima Miroshnichenko et al. 1999

@ref: 3935

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfurellales

family: Desulfurellaceae

genus: Hippea

species: Hippea maritima

full scientific name: Hippea maritima Miroshnichenko et al. 1999

strain designation: MH2, MH₂

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.998

multimedia

@ref: 66793
multimedia content: EM_DSM_10411_1.jpg
caption: electron microscopic image
intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

@ref: 3935
name: HIPPEA MEDIUM (DSMZ Medium 854)
growth: yes
link: https://mediadive.dsmz.de/medium/854
composition: Name: HIPPEA MEDIUM (DSMZ Medium 854) Composition: Sulfur 9.8912 g/l Na-acetate 4.9456 g/l MOPS buffer 2.96736 g/l Na2S x 9 H2O 0.49456 g/l KCl 0.326409 g/l MgCl2 x 6 H2O 0.326409 g/l NH4Cl 0.326409 g/l KH2PO4 0.326409 g/l Yeast extract 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

@ref	growth	type	temperature	range	confidence
3935	positive	growth	55	thermophilic
69480				thermophilic	99.999

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
3935	anaerobe
69480	anaerobe	99.698

spore formation

@ref	spore formation	confidence
69481	no	97
69480	no	99.968

Isolation, sampling and environmental information

isolation

@ref: 3935
sample type: marine sediment from hot vent of tidal zone
geographic location: Matupi Harbour
country: Papua New Guinea
origin.country: PNG
continent: Australia and Oceania

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat

taxonmaps

@ref: 69479
File name: preview.99_3177.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16072;96_1656;97_1982;98_2437;99_3177&stattab=map
Last taxonomy: Hippea maritima subclade
16S sequence: Y18292
Sequence Identity:
Total samples: 432
soil counts: 35
aquatic counts: 149
animal counts: 238
plant counts: 10

Safety information

risk assessment

@ref: 3935
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 3935
description: Hippea maritima 16S rRNA gene, partial
accession: Y18292
length: 1607
database: ena
NCBI tax ID: 760142

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Hippea maritima DSM 10411	GCA_000194135	complete	ncbi	760142
66792	Hippea maritima DSM 10411	760142.3	complete	patric	760142
66792	Hippea maritima MH2, DSM 10411	2504136000	complete	img	760142

GC content

@ref: 3935
GC-content: 40.4
method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	97	no
motile	yes	78.977	no
flagellated	no	93.421	no
gram-positive	no	99.266	no
anaerobic	yes	99.447	no
aerobic	no	98.844	yes
halophile	no	89.416	no
spore-forming	no	95.17	no
glucose-util	no	63.968	no
thermophile	yes	100	yes
glucose-ferment	no	83.535	no

External links

@ref: 3935

culture collection no.: DSM 10411, ATCC 700847

straininfo link

@ref: 73684
straininfo: 44173

literature

topic: Phylogeny
Pubmed-ID: 10425760
title: Hippea maritima gen. nov., sp. nov., a new genus of thermophilic, sulfur-reducing bacterium from submarine hot vents.
authors: Miroshnichenko ML, Rainey FA, Rhode M, Bonch-Osmolovskaya EA
journal: Int J Syst Bacteriol
DOI: 10.1099/00207713-49-3-1033
year: 1999
mesh: Anaerobiosis, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/*classification/cytology/genetics/*isolation & purification/physiology, Temperature, *Water Microbiology
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
3935	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10411)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-10411
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793	Mukherjee et al.		10.1038/nbt.3886	GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life	35: 676-683 2017	28604660
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
73684	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID44173.1	StrainInfo: A central database for resolving microbial strain identifiers