Strain identifier
BacDive ID: 4179
Type strain: 
Species: Desulfurella acetivorans
Strain Designation: A63
Strain history: <- E.A. Bonch-Osmolovskaya, A63
NCBI tax ID(s): 694431 (strain), 33002 (species)
version 8.1 (current version)
General
@ref: 1975
BacDive-ID: 4179
DSM-Number: 5264
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Desulfurella acetivorans A63 is an anaerobe, thermophilic bacterium that was isolated from thermophilic spring.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 694431 | strain |
| 33002 | species |
strain history
- @ref: 1975
- history: <- E.A. Bonch-Osmolovskaya, A63
doi: 10.13145/bacdive4179.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfurellales
- family: Desulfurellaceae
- genus: Desulfurella
- species: Desulfurella acetivorans
- full scientific name: Desulfurella acetivorans Bonch-Osmolovskaya et al. 1993
@ref: 1975
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfurellales
family: Desulfurellaceae
genus: Desulfurella
species: Desulfurella acetivorans
full scientific name: Desulfurella acetivorans Bonch-Osmolovskaya et al. 1993
strain designation: A63
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1975
- name: DESULFURELLA MEDIUM (DSMZ Medium 480)
- growth: yes
- link: https://mediadive.dsmz.de/medium/480
- composition: Name: DESULFURELLA MEDIUM (DSMZ Medium 480) Composition: Sulfur 9.98004 g/l Na-acetate 4.99002 g/l NaHCO3 2.49501 g/l Na2S x 9 H2O 0.499002 g/l CaCl2 x 2 H2O 0.329341 g/l MgCl2 x 6 H2O 0.329341 g/l KCl 0.329341 g/l KH2PO4 0.329341 g/l NH4Cl 0.329341 g/l Yeast extract 0.0998004 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l MnCl2 x 4 H2O 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 1975
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1975
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1975
- sample type: thermophilic spring
- geographic location: Kamchatka peninsula, Uzon vulcano
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_6026.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16506;96_2874;97_3533;98_4471;99_6026&stattab=map
- Last taxonomy: Desulfurella
- 16S sequence: X72768
- Sequence Identity:
- Total samples: 268
- soil counts: 8
- aquatic counts: 187
- animal counts: 72
- plant counts: 1
Safety information
risk assessment
- @ref: 1975
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1975
- description: D.acetivorans gene for 16S rRNA (DSM 5264)
- accession: X72768
- length: 1563
- database: ena
- NCBI tax ID: 694431
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfurella acetivorans A63 | 694431.14 | plasmid | patric | 694431 |
| 66792 | Desulfurella acetivorans A63 | 694431.3 | complete | patric | 694431 |
| 66792 | Desulfurella acetivorans A63, DSM 5264 | 2512564091 | complete | img | 694431 |
GC content
- @ref: 1975
- GC-content: 31.4
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.989 | no |
| anaerobic | yes | 99.374 | yes |
| halophile | no | 92.847 | no |
| spore-forming | no | 94.653 | no |
| glucose-util | no | 71.129 | no |
| thermophile | yes | 100 | no |
| flagellated | no | 93.619 | no |
| motile | yes | 77.842 | no |
| aerobic | no | 98.576 | yes |
| glucose-ferment | no | 87.143 | no |
External links
@ref: 1975
culture collection no.: DSM 5264, ATCC 51451
straininfo link
- @ref: 73679
- straininfo: 42991
literature
- topic: Enzymology
- Pubmed-ID: 9485604
- title: Macrorestriction analysis of Desulfurella acetivorans and Desulfurella multipotens.
- authors: Pradella S, Hippe H, Stackebrandt E
- journal: FEMS Microbiol Lett
- DOI: 10.1111/j.1574-6968.1998.tb12852.x
- year: 1998
- mesh: DNA, Bacterial/analysis, Desulfovibrio, Electrophoresis, Gel, Pulsed-Field, Extrachromosomal Inheritance, Genome, Bacterial, Restriction Mapping, Sulfur-Reducing Bacteria/*classification/*genetics/growth & development
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1975 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5264) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5264 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73679 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42991.1 | StrainInfo: A central database for resolving microbial strain identifiers |