Strain identifier

BacDive ID: 4170

Type strain: Yes

Species: Fundidesulfovibrio butyratiphilus

Strain Designation: BSY

Strain history: A. Ueki strain BSY.

NCBI tax ID(s): 442866 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15794

BacDive-ID: 4170

DSM-Number: 21556

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Fundidesulfovibrio butyratiphilus BSY is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from anaerobic municipal sewage sludge digester.

NCBI tax id

  • NCBI tax id: 442866
  • Matching level: species

strain history

@refhistory
15794<- A. Ueki, Yamagata Univ., Tsuruoka, Japan; BSY <- A. Ueki {1998}
67770A. Ueki strain BSY.

doi: 10.13145/bacdive4170.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Fundidesulfovibrio
  • species: Fundidesulfovibrio butyratiphilus
  • full scientific name: Fundidesulfovibrio butyratiphilus (Suzuki et al. 2010) Galushko and Kuever 2021

  • synonyms

    • @ref: 20215
    • synonym: Desulfovibrio butyratiphilus

@ref: 15794

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Fundidesulfovibrio

species: Fundidesulfovibrio butyratiphilus

full scientific name: Fundidesulfovibrio butyratiphilus

strain designation: BSY

type strain: yes

Morphology

cell morphology

  • @ref: 23217
  • gram stain: negative
  • cell length: 2.4-5.6 µm
  • cell width: 0.8-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: polar

colony morphology

@refincubation periodcolony color
157943-7 days
23217greyish

Culture and growth conditions

culture medium

  • @ref: 15794
  • name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/194
  • composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l Na-butyrate 0.997009 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15794positivegrowth30mesophilic
23217positivegrowth25-40
23217positiveoptimum35mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
23217positivegrowth6.2-8.0
23217positiveoptimum7.1

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15794anaerobe
23217anaerobe

spore formation

  • @ref: 23217
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
23217NaClpositivegrowth0-2.0 %(w/v)
23217NaClpositiveoptimum0.5 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-6(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2321729806fumarate-electron acceptor
2321717632nitrate-electron acceptor
2321717359sulfite-electron acceptor
2321715740formate-electron donor
2321729806fumarate-electron donor
2321725115malate-electron donor
2321730031succinate-electron donor
2321716189sulfate+electron acceptor
2321716094thiosulfate+electron acceptor
2321717968butyrate+electron donor
2321728831propanol+electron donor
2321716189sulfate+reduction

enzymes

@refvalueactivityec
23217catalase-1.11.1.6
23217cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15794anaerobic municipal sewage sludge digesterYokohamaJapanJPNAsia
67770Anaerobic sewage sludge digester in YokohamaJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Engineered#Waste#Sewage sludge
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 15794
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
15794Desulfovibrio butyratiphilus gene for 16S ribosomal RNA, partial sequence, strain: BSYAB3033051450ena442866
67770Desulfovibrio butyratiphilus gene for 16S ribosomal RNA, partial sequence, strain: BSTAB3033021286ena442866

GC content

  • @ref: 15794
  • GC-content: 63.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15794

culture collection no.: DSM 21556, JCM 15519

straininfo link

  • @ref: 73672
  • straininfo: 398940

literature

  • topic: Phylogeny
  • Pubmed-ID: 19654341
  • title: Desulfovibrio butyratiphilus sp. nov., a Gram-negative, butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic municipal sewage sludge digester.
  • authors: Suzuki D, Ueki A, Shizuku T, Ohtaki Y, Ueki K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.013771-0
  • year: 2009
  • mesh: Anaerobiosis, Butyrates/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/metabolism, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Sulfates/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15794Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21556)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21556
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23217Daisuke Suzuki, Atsuko Ueki, Toshiko Shizuku, Yoshimi Ohtaki, Katsuji Ueki10.1099/ijs.0.013771-0Desulfovibrio butyratiphilus sp. nov., a Gram-negative, butyrate-oxidizing, sulfate-reducing bacterium isolated from an anaerobic municipal sewage sludge digesterIJSEM 60: 595-602 201019654341
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
73672Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398940.1StrainInfo: A central database for resolving microbial strain identifiers