Strain identifier

BacDive ID: 4169

Type strain: No

Species: Humidesulfovibrio idahonensis

Strain history: <- R. F. Rosenzweig, Div. Biol. Sci., Univ. Montana, Missoula, USA; CY2 <- S. Ramamoorthy <- C. Yarwood

NCBI tax ID(s): 575978 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5810

BacDive-ID: 4169

DSM-Number: 15451

keywords: 16S sequence, Bacteria, anaerobe

description: Humidesulfovibrio idahonensis DSM 15451 is an anaerobe bacterium that was isolated from freshwater sediment.

NCBI tax id

  • NCBI tax id: 575978
  • Matching level: species

strain history

  • @ref: 5810
  • history: <- R. F. Rosenzweig, Div. Biol. Sci., Univ. Montana, Missoula, USA; CY2 <- S. Ramamoorthy <- C. Yarwood

doi: 10.13145/bacdive4169.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Humidesulfovibrio
  • species: Humidesulfovibrio idahonensis
  • full scientific name: Humidesulfovibrio idahonensis (Sass et al. 2009) Waite et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Desulfovibrio idahonensis

@ref: 5810

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Humidesulfovibrio

species: Humidesulfovibrio idahonensis

full scientific name: Humidesulfovibrio idahonensis (Sass et al. 2009) Waite et al. 2020

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5810
  • name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/63
  • composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 5810
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

oxygen tolerance

  • @ref: 5810
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 5810
  • sample type: freshwater sediment
  • geographic location: Idaho, Lake Coeur d’Alene
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Freshwater

Safety information

risk assessment

  • @ref: 5810
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5810
  • description: Desulfovibrio idahonensis 16S rRNA gene, strain CY2
  • accession: AJ582758
  • length: 1529
  • database: nuccore
  • NCBI tax ID: 575978

External links

@ref: 5810

culture collection no.: DSM 15451, CY 2

straininfo link

  • @ref: 73671
  • straininfo: 400433

literature

  • topic: Phylogeny
  • Pubmed-ID: 19605721
  • title: Desulfovibrio idahonensis sp. nov., sulfate-reducing bacteria isolated from a metal(loid)-contaminated freshwater sediment.
  • authors: Sass H, Ramamoorthy S, Yarwood C, Langner H, Schumann P, Kroppenstedt RM, Spring S, Rosenzweig RF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.016709-0
  • year: 2009
  • mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/metabolism, Fatty Acids/analysis, *Fresh Water, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Idaho, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNA, Sulfur Compounds/*metabolism, Temperature
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
5810Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15451)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15451
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
73671Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400433.1StrainInfo: A central database for resolving microbial strain identifiers