Strain identifier

BacDive ID: 4165

Type strain: Yes

Species: Solidesulfovibrio marrakechensis

Strain Designation: EMSSDQ4

Strain history: <- A.-I. Qatibi; EMSSDQ4

NCBI tax ID(s): 436510 (species)

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General

@ref: 8054

BacDive-ID: 4165

DSM-Number: 19337

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Solidesulfovibrio marrakechensis EMSSDQ4 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from olive mill wastewater taken from an aeration basin.

NCBI tax id

  • NCBI tax id: 436510
  • Matching level: species

strain history

  • @ref: 8054
  • history: <- A.-I. Qatibi; EMSSDQ4

doi: 10.13145/bacdive4165.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Solidesulfovibrio
  • species: Solidesulfovibrio marrakechensis
  • full scientific name: Solidesulfovibrio marrakechensis (Chamkh et al. 2009) Waite et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Desulfovibrio marrakechensis

@ref: 8054

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Solidesulfovibrio

species: Solidesulfovibrio marrakechensis

full scientific name: Solidesulfovibrio marrakechensis (Chamkh et al. 2009) Waite et al. 2020

strain designation: EMSSDQ4

type strain: yes

Morphology

cell morphology

  • @ref: 23214
  • gram stain: negative
  • cell length: 3.0-4.0 µm
  • cell width: 1.3-1.6 µm
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 8054
  • name: DESULFOVIBRIO MARRAKECHENSIS MEDIUM (DSMZ Medium 1202)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1202
  • composition: Name: SOLIDESULFOVIBRIO MARRAKECHENSIS MEDIUM (DSMZ Medium 1202) Composition: Na2SO4 2.79163 g/l Na2CO3 1.49551 g/l Na-lactate 1.19641 g/l K2HPO4 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.498504 g/l NaCl 0.398804 g/l MgCl2 x 6 H2O 0.299103 g/l Na2S x 9 H2O 0.249252 g/l L-Cysteine HCl x H2O 0.249252 g/l Yeast extract 0.0997009 g/l KCl 0.0997009 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8054positivegrowth37mesophilic
23214positivegrowth20-50
23214positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
23214positiveoptimum7.0
23214positivegrowth6.5-8.5alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8054anaerobe
23214anaerobe

halophily

@refsaltgrowthtested relationconcentration
23214NaClpositivegrowth0-35 g/L
23214NaClpositiveoptimum0 g/L

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23214356862-butanol-carbon source
23214620642,3-butanediol-carbon source
23214479273-coumarate-carbon source
23214161933-hydroxybenzoate-carbon source
23214199503-O-methylgallate-carbon source
23214323734-coumarate-carbon source
23214178794-hydroxybenzoate-carbon source
23214181014-hydroxyphenylacetic acid-carbon source
2321430089acetate-carbon source
2321416449alanine-carbon source
2321429016arginine-carbon source
2321416150benzoate-carbon source
2321417968butyrate-carbon source
23214casamino acids-carbon source
2321418135catechol-carbon source
2321415354choline-carbon source
2321423248cinnamate-carbon source
2321435899crotonate-carbon source
2321430742ethylene glycol-carbon source
2321429749ferulate-carbon source
2321428757fructose-carbon source
2321416918gallate-carbon source
2321417234glucose-carbon source
2321417754glycerol-carbon source
2321415428glycine-carbon source
2321417716lactose-carbon source
2321425094lysine-carbon source
2321432357m-coumaric acid-carbon source
2321417306maltose-carbon source
2321437684mannose-carbon source
2321417790methanol-carbon source
2321486903methyl p-anisate-carbon source
23214peptone-carbon source
2321415882phenol-carbon source
2321417272propionate-carbon source
2321436241protocatechuate-carbon source
2321427810resorcinol-carbon source
2321433942ribose-carbon source
2321417992sucrose-carbon source
23214132111syringate-carbon source
2321416632vanillate-carbon source
2321418222xylose-carbon source
23214yeast extract-carbon source
2321428885butanol-electron donor
2321430742ethylene glycol-electron donor
2321428757fructose-electron donor
2321417754glycerol-electron donor
2321417790methanol-electron donor
2321430031succinate-electron donor
2321433403elemental sulfur+electron acceptor
2321429806fumarate+electron acceptor
23214169971,2-propandiol+electron donor
23214178242-propanol+electron donor
2321428757fructose-fermentation
2321429806fumarate+fermentation
2321417754glycerol-fermentation
2321425115malate+fermentation
2321424996lactate+oxidation

enzymes

@refvalueactivityec
23214catalase+1.11.1.6
23214cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8054olive mill wastewater taken from an aeration basinMarrakechMoroccoMARAfrica
23214aeration basinMarrakechMoroccoMARAfrica

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Engineered#Built environment#Container (Reservoir)
#Engineered#Waste#Industrial wastewater

Safety information

risk assessment

  • @ref: 8054
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8054
  • description: Desulfovibrio marrakechensis partial 16S rRNA gene, type strain DSM 19337T
  • accession: AM947130
  • length: 1539
  • database: ena
  • NCBI tax ID: 436510

GC content

  • @ref: 8054
  • GC-content: 65.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 8054

culture collection no.: DSM 19337, ATCC BAA 1562

straininfo link

  • @ref: 73667
  • straininfo: 401883

literature

  • topic: Phylogeny
  • Pubmed-ID: 19406771
  • title: Desulfovibrio marrakechensis sp. nov., a 1,4-tyrosol-oxidizing, sulfate-reducing bacterium isolated from olive mill wastewater.
  • authors: Chamkh F, Sproer C, Lemos PC, Besson S, El Asli AG, Bennisse R, Labat M, Reis M, Qatibi AI
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.003822-0
  • year: 2009
  • mesh: Base Composition, DNA, Bacterial/analysis, Desulfovibrio/*classification/genetics/isolation & purification/physiology, *Industrial Waste, Molecular Sequence Data, Morocco, *Olea, Oxidation-Reduction, Phenylethyl Alcohol/*analogs & derivatives/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Sulfates/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/metabolism, Waste Disposal, Fluid/methods, *Water Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8054Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19337)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19337
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23214Fatima Chamkh, Cathrin Spröer, Paulo Costa Lemos, Stephane Besson, Abdel-Ghani El Asli, Rhizlane Bennisse, Marc Labat, Maria Reis, Abdel-Illah Qatibi10.1099/ijs.0.003822-0Desulfovibrio marrakechensis sp. nov., a 1,4-tyrosol-oxidizing, sulfate-reducing bacterium isolated from olive mill wastewaterIJSEM 59: 936-942 200919406771
73667Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401883.1StrainInfo: A central database for resolving microbial strain identifiers