Strain identifier
BacDive ID: 4156
Type strain: 
Species: Desulfobaculum bizertense
Strain Designation: MB3
Strain history: <- M.-L. Fardeau, Université de Provence, Marseille, France; MB3
NCBI tax ID(s): 1121442 (strain), 376490 (species)
version 8.1 (current version)
General
@ref: 7259
BacDive-ID: 4156
DSM-Number: 18034
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic
description: Desulfobaculum bizertense MB3 is an anaerobe, thermophilic bacterium that was isolated from marine sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 376490 | species |
| 1121442 | strain |
strain history
- @ref: 7259
- history: <- M.-L. Fardeau, Université de Provence, Marseille, France; MB3
doi: 10.13145/bacdive4156.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfobaculum
- species: Desulfobaculum bizertense
- full scientific name: Desulfobaculum bizertense corrig. (Haouari et al. 2006) Park et al. 2023
synonyms
@ref synonym 20215 Paradesulfovibrio bizertensis 20215 Desulfobaculum bizertensis 20215 Desulfovibrio bizertensis
@ref: 7259
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Paradesulfovibrio
species: Paradesulfovibrio bizertensis
full scientific name: Paradesulfovibrio bizertensis (Haouari et al. 2006) Waite et al. 2020
strain designation: MB3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7259
- name: HALODESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 163)
- growth: yes
- link: https://mediadive.dsmz.de/medium/163
- composition: Name: HALODESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 163) Composition: NaCl 25.0 g/l Na-DL-lactate 2.0 g/l MgSO4 x 7 H2O 2.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l NH4Cl 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Na-thioglycolate 0.1 g/l CaCl2 x 2 H2O 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.00049 g/l Distilled water
culture temp
- @ref: 7259
- growth: positive
- type: growth
- temperature: 40
- range: thermophilic
Physiology and metabolism
oxygen tolerance
- @ref: 7259
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 7259
- sample type: marine sediment
- geographic location: near Bizerte
- country: Tunisia
- origin.country: TUN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5414.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16666;96_2625;97_3215;98_4038;99_5414&stattab=map
- Last taxonomy: Desulfovibrio bizertensis subclade
- 16S sequence: DQ422859
- Sequence Identity:
- Total samples: 221
- soil counts: 5
- aquatic counts: 154
- animal counts: 61
- plant counts: 1
Safety information
risk assessment
- @ref: 7259
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7259
- description: Desulfovibrio bizertensis strain MB3 16S ribosomal RNA gene, partial sequence
- accession: DQ422859
- length: 1512
- database: ena
- NCBI tax ID: 376490
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paradesulfovibrio bizertensis DSM 18034 | GCA_900167065 | scaffold | ncbi | 1121442 |
| 66792 | Desulfovibrio bizertensis DSM 18034 strain DSM 18034 | 1121442.5 | wgs | patric | 1121442 |
| 66792 | Desulfovibrio bizertensis DSM 18034 | 2568526004 | draft | img | 1121442 |
GC content
- @ref: 7259
- GC-content: 51
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 93.566 | no |
| flagellated | yes | 59.529 | no |
| gram-positive | no | 99.297 | no |
| anaerobic | yes | 98.465 | yes |
| aerobic | no | 97.833 | no |
| halophile | yes | 52.332 | no |
| spore-forming | no | 95.779 | no |
| thermophile | no | 81.621 | no |
| glucose-util | yes | 54.315 | no |
| glucose-ferment | no | 81.387 | no |
External links
@ref: 7259
culture collection no.: DSM 18034, NCIMB 14199
straininfo link
- @ref: 73657
- straininfo: 297187
literature
- topic: Phylogeny
- Pubmed-ID: 17158997
- title: Isolation of sulfate-reducing bacteria from Tunisian marine sediments and description of Desulfovibrio bizertensis sp. nov.
- authors: Haouari O, Fardeau ML, Casalot L, Tholozan JL, Hamdi M, Ollivier B
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64530-0
- year: 2006
- mesh: DNA, Bacterial/analysis, Desulfovibrio/*classification/genetics/isolation & purification, Genotype, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sulfates/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification/physiology, Tunisia
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7259 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18034) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18034 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73657 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297187.1 | StrainInfo: A central database for resolving microbial strain identifiers |