Strain identifier
BacDive ID: 4155
Type strain: 
Species: Humidesulfovibrio arcticus
Strain Designation: B15
Strain history: <- S. Pecheritsyna, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; B15 <- S. A. Pecheritsyna {2005}
NCBI tax ID(s): 360296 (species)
version 8.1 (current version)
General
@ref: 15538
BacDive-ID: 4155
DSM-Number: 21064
keywords: 16S sequence, Bacteria, anaerobe, psychrophilic, Gram-negative, motile
description: Humidesulfovibrio arcticus B15 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from water brine within permafrost.
NCBI tax id
- NCBI tax id: 360296
- Matching level: species
strain history
- @ref: 15538
- history: <- S. Pecheritsyna, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia; B15 <- S. A. Pecheritsyna {2005}
doi: 10.13145/bacdive4155.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Humidesulfovibrio
- species: Humidesulfovibrio arcticus
- full scientific name: Humidesulfovibrio arcticus (Pecheritsyna et al. 2012) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio arcticus
@ref: 15538
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Humidesulfovibrio
species: Humidesulfovibrio arcticus
full scientific name: Humidesulfovibrio arcticus (Pecheritsyna et al. 2012) Waite et al. 2020
strain designation: B15
type strain: yes
Morphology
cell morphology
- @ref: 29802
- gram stain: negative
- cell length: 3.0-4.0 µm
- cell width: 0.4-0.5 µm
- motility: yes
colony morphology
- @ref: 15538
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 15538
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15538 | positive | growth | 24 | psychrophilic |
| 29802 | positive | optimum | 24 | psychrophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29802 | positive | growth | 6.0-8.0 |
| 29802 | positive | optimum | 6.7-7.0 |
Physiology and metabolism
oxygen tolerance
- @ref: 15538
- oxygen tolerance: anaerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29802 | NaCl | positive | growth | 0-2 % |
| 29802 | NaCl | positive | optimum | 0.20 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29802 | 30089 | acetate | + | carbon source |
| 29802 | 16236 | ethanol | + | carbon source |
| 29802 | 15740 | formate | + | carbon source |
| 29802 | 24996 | lactate | + | carbon source |
| 29802 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 15538
- sample type: water brine within permafrost
- geographic location: North Eurasia, Coast of Barents Sea, Varandey Peninsula
- country: Russia
- origin.country: RUS
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Environmental | #Terrestrial | #Permafrost |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 15538
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15538
- description: Desulfovibrio arcticus strain B15 16S ribosomal RNA gene, partial sequence
- accession: DQ296030
- length: 1425
- database: ena
- NCBI tax ID: 360296
GC content
| @ref | GC-content | method |
|---|---|---|
| 15538 | 55.2 | thermal denaturation, midpoint method (Tm) |
| 29802 | 55.2 |
External links
@ref: 15538
culture collection no.: DSM 21064, VKM B-2367
straininfo link
- @ref: 73656
- straininfo: 369387
literature
- topic: Phylogeny
- Pubmed-ID: 21317277
- title: Desulfovibrio arcticus sp. nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg.
- authors: Pecheritsyna SA, Rivkina EM, Akimov VN, Shcherbakova VA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.021451-0
- year: 2011
- mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/physiology, *Environmental Microbiology, Flagella/physiology, Hydrogensulfite Reductase/analysis, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Sulfates/*metabolism, Temperature
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15538 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21064) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21064 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29802 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26179 | 28776041 | |
| 73656 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID369387.1 | StrainInfo: A central database for resolving microbial strain identifiers |