Strain identifier

BacDive ID: 4154

Type strain: Yes

Species: Solidesulfovibrio carbinoliphilus

Strain Designation: D41

Strain history: <- R.S. Tanner; D41

NCBI tax ID(s): 345370 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7041

BacDive-ID: 4154

DSM-Number: 17524

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Solidesulfovibrio carbinoliphilus D41 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from gas condensate-contaminated aquifer.

NCBI tax id

  • NCBI tax id: 345370
  • Matching level: species

strain history

  • @ref: 7041
  • history: <- R.S. Tanner; D41

doi: 10.13145/bacdive4154.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Solidesulfovibrio
  • species: Solidesulfovibrio carbinoliphilus
  • full scientific name: Solidesulfovibrio carbinoliphilus (Allen et al. 2008) Waite et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Desulfovibrio carbinoliphilus

@ref: 7041

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Solidesulfovibrio

species: Solidesulfovibrio carbinoliphilus

full scientific name: Solidesulfovibrio carbinoliphilus (Allen et al. 2008) Waite et al. 2020

strain designation: D41

type strain: yes

Morphology

cell morphology

  • @ref: 32459
  • gram stain: negative
  • cell length: 2.7 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 7041
  • name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/641
  • composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7041positivegrowth30mesophilic
32459positivegrowth22-36

culture pH

  • @ref: 32459
  • ability: positive
  • type: growth
  • pH: 5.8-8.4

Physiology and metabolism

oxygen tolerance

  • @ref: 7041
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 32459
  • spore formation: no

Isolation, sampling and environmental information

isolation

  • @ref: 7041
  • sample type: gas condensate-contaminated aquifer
  • geographic location: Colorado, Fort Lupton
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Groundwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_52346.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_120;96_2542;97_4417;98_5659;99_52346&stattab=map
  • Last taxonomy: Desulfovibrio carbinoliphilus
  • 16S sequence: DQ186200
  • Sequence Identity:
  • Total samples: 7
  • soil counts: 2
  • aquatic counts: 5

Safety information

risk assessment

  • @ref: 7041
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7041
  • description: Desulfovibrio carbinoliphilus strain D41 16S ribosomal RNA gene, partial sequence
  • accession: DQ186200
  • length: 1510
  • database: ena
  • NCBI tax ID: 345370

GC content

@refGC-contentmethod
704163high performance liquid chromatography (HPLC)
3245963

External links

@ref: 7041

culture collection no.: DSM 17524, ATCC BAA 1241

straininfo link

  • @ref: 73655
  • straininfo: 403767

literature

  • topic: Phylogeny
  • Pubmed-ID: 18523171
  • title: Desulfovibrio carbinoliphilus sp. nov., a benzyl alcohol-oxidizing, sulfate-reducing bacterium isolated from a gas condensate-contaminated aquifer.
  • authors: Allen TD, Kraus PF, Lawson PA, Drake GR, Balkwill DL, Tanner RS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65524-0
  • year: 2008
  • mesh: Bacterial Typing Techniques, Base Composition, Benzyl Alcohol/*metabolism, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Desulfovibrio/*classification/genetics/*isolation & purification/metabolism, Fresh Water/*microbiology, Genes, rRNA, Molecular Sequence Data, Oxidation-Reduction, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Sulfates/*metabolism, Sulfur-Reducing Bacteria/classification/genetics/isolation & purification/metabolism, *Water Pollution, Chemical
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7041Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17524)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17524
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32459Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2868128776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73655Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403767.1StrainInfo: A central database for resolving microbial strain identifiers