Strain identifier
BacDive ID: 4152
Type strain: 
Species: Solidesulfovibrio aerotolerans
Strain Designation: DvO5
Strain history: K. Ingvorsen DvO5.
NCBI tax ID(s): 295255 (species)
version 8.1 (current version)
General
@ref: 6570
BacDive-ID: 4152
DSM-Number: 16695
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Solidesulfovibrio aerotolerans DvO5 is an anaerobe, mesophilic, motile bacterium that was isolated from Activated sludge.
NCBI tax id
- NCBI tax id: 295255
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6570 | <- K. Ingvorsen, Århus Univ., Denmark; DvO5 <- K. U. Kjeldsen {2000} |
| 67770 | K. Ingvorsen DvO5. |
doi: 10.13145/bacdive4152.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Solidesulfovibrio
- species: Solidesulfovibrio aerotolerans
- full scientific name: Solidesulfovibrio aerotolerans (Mogensen et al. 2009) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio aerotolerans
@ref: 6570
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Solidesulfovibrio
species: Solidesulfovibrio aerotolerans
full scientific name: Solidesulfovibrio aerotolerans (Mogensen et al. 2009) Waite et al. 2020
strain designation: DvO5
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.673 | |
| 69480 | 99.96 | negative |
Culture and growth conditions
culture medium
- @ref: 6570
- name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)
- growth: yes
- link: https://mediadive.dsmz.de/medium/641
- composition: Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6570 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 6570 | anaerobe | |
| 69480 | anaerobe | 99.652 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 92 |
| 69480 | no | 99.879 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 6570 | Activated sludge | Denmark | DNK | Europe |
| 67770 | Activated sludge from a wastewater treatment plant in Odder | Denmark | DNK | Europe |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
Safety information
risk assessment
- @ref: 6570
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6570
- description: Desulfovibrio aerotolerans strain DvO5 16S ribosomal RNA gene, partial sequence
- accession: AY746987
- length: 1366
- database: ena
- NCBI tax ID: 295255
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Solidesulfovibrio aerotolerans DSM 16695 | GCA_009856865 | contig | ncbi | 295255 |
| 66792 | Desulfovibrio aerotolerans strain DSM 16695 | 295255.3 | wgs | patric | 295255 |
GC content
- @ref: 67770
- GC-content: 57.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 92 | no |
| gram-positive | no | 98.335 | no |
| anaerobic | yes | 97.811 | yes |
| halophile | no | 86.539 | no |
| spore-forming | no | 91.536 | no |
| glucose-util | no | 56.233 | no |
| motile | yes | 87.396 | no |
| flagellated | no | 71.148 | no |
| thermophile | no | 96.127 | yes |
| aerobic | no | 96.942 | yes |
| glucose-ferment | no | 81.142 | no |
External links
@ref: 6570
culture collection no.: DSM 16695, JCM 12613
straininfo link
- @ref: 73653
- straininfo: 297632
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16701597 | Desulfovibrio aerotolerans sp. nov., an oxygen tolerant sulphate-reducing bacterium isolated from activated sludge. | Mogensen GL, Kjeldsen KU, Ingvorsen K | Anaerobe | 10.1016/j.anaerobe.2005.04.002 | 2005 | ||
| Metabolism | 25228086 | Sulfate-reducing bacteria mediate thionation of diphenylarsinic acid under anaerobic conditions. | Guan L, Shiiya A, Hisatomi S, Fujii K, Nonaka M, Harada N | Biodegradation | 10.1007/s10532-014-9713-2 | 2014 | Anaerobiosis, Arsenicals/*metabolism, Biodegradation, Environmental, Chromatography, Liquid, DNA, Ribosomal/genetics, Desulfovibrio/isolation & purification/*metabolism, Metabolomics, Molecular Sequence Data, Oxidation-Reduction, Polymerase Chain Reaction, Spectrophotometry, Atomic, Sulfates/*metabolism, Sulfhydryl Compounds/*metabolism | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6570 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16695) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16695 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73653 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297632.1 | StrainInfo: A central database for resolving microbial strain identifiers |