Strain identifier
BacDive ID: 4144
Type strain: 
Species: Desulfovibrio ferrophilus
Strain Designation: IS5
Strain history: <- H. T. Dinh, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; IS5 <- H. T. Dinh {1999}
NCBI tax ID(s): 241368 (species)
version 8.1 (current version)
General
@ref: 5902
BacDive-ID: 4144
DSM-Number: 15579
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfovibrio ferrophilus IS5 is an anaerobe, mesophilic bacterium that was isolated from enrichment culture with metallic iron as the only electron donor.
NCBI tax id
- NCBI tax id: 241368
- Matching level: species
strain history
- @ref: 5902
- history: <- H. T. Dinh, Max-Planck-Inst. Marine Microbiology, Bremen, Germany; IS5 <- H. T. Dinh {1999}
doi: 10.13145/bacdive4144.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio ferrophilus
- full scientific name: Desulfovibrio ferrophilus Emerson et al. 2007
@ref: 5902
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio ferrophilus
full scientific name: Desulfovibrio ferrophilus
strain designation: IS5
type strain: no
Culture and growth conditions
culture medium
- @ref: 5902
- name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/195c
- composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 5902
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5902
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5902
- sample type: enrichment culture with metallic iron as the only electron donor
- geographic location: North Sea, Wilhelmshaven
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Laboratory
- Cat3: #Lab enrichment
taxonmaps
- @ref: 69479
- File name: preview.99_62516.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5791;96_27320;97_34349;98_44276;99_62516&stattab=map
- Last taxonomy: Desulfocurvus
- 16S sequence: AY274449
- Sequence Identity:
- Total samples: 880
- soil counts: 59
- aquatic counts: 749
- animal counts: 27
- plant counts: 45
Sequence information
16S sequences
- @ref: 5902
- description: Desulfovibrio ferrophilus 16S ribosomal RNA gene, partial sequence
- accession: AY274449
- length: 1491
- database: ena
- NCBI tax ID: 241368
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfovibrio ferrophilus IS5 | GCA_003966735 | complete | ncbi | 241368 |
| 66792 | Desulfovibrio ferrophilus IS5 | 2823931327 | draft | img | 241368 |
GC content
- @ref: 5902
- GC-content: 55.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 92.17 | no |
| flagellated | yes | 64.699 | no |
| gram-positive | no | 98.95 | no |
| anaerobic | yes | 98.962 | yes |
| aerobic | no | 98.093 | no |
| halophile | no | 50.604 | no |
| spore-forming | no | 94.729 | no |
| glucose-util | no | 57.735 | no |
| thermophile | no | 93.651 | yes |
| glucose-ferment | no | 84.712 | no |
External links
@ref: 5902
culture collection no.: DSM 15579
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5902 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15579) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15579 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |