Strain identifier
BacDive ID: 4143
Type strain: 
Species: Oceanidesulfovibrio indonesiensis
Strain history: <- NCIMB <- I. B. Beech and M. J. Feio, University of Portsmouth, Portsmouth, UK; Ind 1 <- V. Zinkevich {1992}
General
@ref: 5620
BacDive-ID: 4143
DSM-Number: 15121
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Oceanidesulfovibrio indonesiensis DSM 15121 is an anaerobe, mesophilic bacterium that was isolated from biofilm on severely corroded carbon steel structure of an oil storage vessel in marine environment.
strain history
- @ref: 5620
- history: <- NCIMB <- I. B. Beech and M. J. Feio, University of Portsmouth, Portsmouth, UK; Ind 1 <- V. Zinkevich {1992}
doi: 10.13145/bacdive4143.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Oceanidesulfovibrio
- species: Oceanidesulfovibrio indonesiensis
- full scientific name: Oceanidesulfovibrio indonesiensis (Feio et al. 2000) Galushko and Kuever 2021
synonyms
@ref synonym 20215 Desulfovibrio indonesiensis 20215 Desulfovibrio indonensis
@ref: 5620
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Oceanidesulfovibrio
species: Oceanidesulfovibrio indonesiensis
full scientific name: Oceanidesulfovibrio indonesiensis
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5620
- name: DESULFOVIBRIO MEDIUM (SEAWATER) (DSMZ Medium 63b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63b
- composition: Name: DESULFOVIBRIO MEDIUM (SEAWATER) (DSMZ Medium 63b) Composition: Na-DL-lactate 2.0 g/l MgSO4 x 7 H2O 2.0 g/l NH4Cl 1.0 g/l Na2SO4 1.0 g/l Yeast extract 1.0 g/l K2HPO4 0.5 g/l FeSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.00049 g/l Sea water Distilled water
culture temp
- @ref: 5620
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 5620
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 5620
- sample type: biofilm on severely corroded carbon steel structure of an oil storage vessel in marine environment
- country: Indonesia
- origin.country: IDN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Biofilm |
taxonmaps
- @ref: 69479
- File name: preview.99_87991.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1419;96_11901;97_14423;98_17814;99_87991&stattab=map
- Last taxonomy: Desulfovibrio indonesiensis
- 16S sequence: Y09504
- Sequence Identity:
- Total samples: 87
- soil counts: 6
- aquatic counts: 80
- animal counts: 1
Safety information
risk assessment
- @ref: 5620
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5620
- description: D.indonensis 16S rRNA gene, partial
- accession: Y09504
- length: 1549
- database: ena
- NCBI tax ID: 54767
GC content
- @ref: 5620
- GC-content: 58.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 5620
culture collection no.: DSM 15121, NCIMB 13468, Ind 1
straininfo link
- @ref: 73646
- straininfo: 60894
literature
- topic: Phylogeny
- Pubmed-ID: 16887631
- title: Isolation and characterisation of a novel sulphate-reducing bacterium of the Desulfovibrio genus.
- authors: Feio MJ, Beech IB, Carepo M, Lopes JM, Cheung CW, Franco R, Guezennec J, Smith JR, Mitchell JI, Moura JJ, Lino AR
- journal: Anaerobe
- DOI: 10.1006/anae.1997.0142
- year: 1998
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5620 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15121) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15121 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 73646 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID60894.1 | StrainInfo: A central database for resolving microbial strain identifiers |