Strain identifier
BacDive ID: 4138
Type strain:
Species: Solidesulfovibrio burkinensis
Strain Designation: HDv
Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; HDv <- A. S. Ouattara {1990}
NCBI tax ID(s): 81405 (species)
General
@ref: 2841
BacDive-ID: 4138
DSM-Number: 6830
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Solidesulfovibrio burkinensis HDv is an anaerobe, mesophilic bacterium that was isolated from ricefield soil.
NCBI tax id
- NCBI tax id: 81405
- Matching level: species
strain history
- @ref: 2841
- history: <- J.-L. Garcia, Université de Provence, Marseille, France; HDv <- A. S. Ouattara {1990}
doi: 10.13145/bacdive4138.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Solidesulfovibrio
- species: Solidesulfovibrio burkinensis
- full scientific name: Solidesulfovibrio burkinensis (Ouattara et al. 1999) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio burkinensis
@ref: 2841
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Solidesulfovibrio
species: Solidesulfovibrio burkinensis
full scientific name: Solidesulfovibrio burkinensis (Ouattara et al. 1999) Waite et al. 2020
strain designation: HDv
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2841
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 2841
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2841
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2841
- sample type: ricefield soil
- country: Burkina Faso
- origin.country: BFA
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
Safety information
risk assessment
- @ref: 2841
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2841
- description: Desulfovibrio burkinensis strain HDv 16S ribosomal RNA gene, partial sequence
- accession: AF053752
- length: 1540
- database: ena
- NCBI tax ID: 81405
GC content
- @ref: 2841
- GC-content: 66.6
External links
@ref: 2841
culture collection no.: DSM 6830
straininfo link
- @ref: 73641
- straininfo: 44172
literature
- topic: Phylogeny
- Pubmed-ID: 10319487
- title: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans.
- authors: Ouattara AS, Patel BK, Cayol JL, Cuzin N, Traore AS, Garcia JL
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-2-639
- year: 1999
- mesh: Bacterial Typing Techniques, Base Composition, Burkina Faso, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Oryza, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2841 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6830) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6830 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
73641 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44172.1 | StrainInfo: A central database for resolving microbial strain identifiers |