Strain identifier

BacDive ID: 4138

Type strain: Yes

Species: Solidesulfovibrio burkinensis

Strain Designation: HDv

Strain history: <- J.-L. Garcia, Université de Provence, Marseille, France; HDv <- A. S. Ouattara {1990}

NCBI tax ID(s): 81405 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2841

BacDive-ID: 4138

DSM-Number: 6830

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Solidesulfovibrio burkinensis HDv is an anaerobe, mesophilic bacterium that was isolated from ricefield soil.

NCBI tax id

  • NCBI tax id: 81405
  • Matching level: species

strain history

  • @ref: 2841
  • history: <- J.-L. Garcia, Université de Provence, Marseille, France; HDv <- A. S. Ouattara {1990}

doi: 10.13145/bacdive4138.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Solidesulfovibrio
  • species: Solidesulfovibrio burkinensis
  • full scientific name: Solidesulfovibrio burkinensis (Ouattara et al. 1999) Waite et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Desulfovibrio burkinensis

@ref: 2841

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Solidesulfovibrio

species: Solidesulfovibrio burkinensis

full scientific name: Solidesulfovibrio burkinensis (Ouattara et al. 1999) Waite et al. 2020

strain designation: HDv

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2841
  • name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/63
  • composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 2841
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2841
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2841
  • sample type: ricefield soil
  • country: Burkina Faso
  • origin.country: BFA
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 2841
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2841
  • description: Desulfovibrio burkinensis strain HDv 16S ribosomal RNA gene, partial sequence
  • accession: AF053752
  • length: 1540
  • database: ena
  • NCBI tax ID: 81405

GC content

  • @ref: 2841
  • GC-content: 66.6

External links

@ref: 2841

culture collection no.: DSM 6830

straininfo link

  • @ref: 73641
  • straininfo: 44172

literature

  • topic: Phylogeny
  • Pubmed-ID: 10319487
  • title: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans.
  • authors: Ouattara AS, Patel BK, Cayol JL, Cuzin N, Traore AS, Garcia JL
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-2-639
  • year: 1999
  • mesh: Bacterial Typing Techniques, Base Composition, Burkina Faso, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desulfovibrio/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Oryza, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
2841Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6830)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6830
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
73641Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44172.1StrainInfo: A central database for resolving microbial strain identifiers