General

@ref: 3991

BacDive-ID: 4125

DSM-Number: 10636

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Oceanidesulfovibrio gabonensis DSM 10636 is an anaerobe, mesophilic bacterium that was isolated from water sample from oil pipeline.

NCBI tax id

• NCBI tax id: 42056
• Matching level: species

strain history

• @ref: 3991
• history: <- P. Caumette, Université Bordeaux, Laboratoire d'Océanographie Biologique, Arcachon, France; SEBR 2840 <- M. Magot, Sanofi Recherche, Labège, France {1990}

doi: 10.13145/bacdive4125.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Deltaproteobacteria
• order: Desulfovibrionales
• family: Desulfovibrionaceae
• genus: Oceanidesulfovibrio
• species: Oceanidesulfovibrio gabonensis
• full scientific name: Oceanidesulfovibrio gabonensis (Tardy-Jacquenod et al. 1996) Galushko and Kuever 2021

• synonyms

  • @ref: 20215
  • synonym: Desulfovibrio gabonensis

@ref: 3991

domain: Bacteria

phylum: Pseudomonadota

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Oceanidesulfovibrio

species: Oceanidesulfovibrio gabonensis

full scientific name: Oceanidesulfovibrio gabonensis

type strain: yes

Culture and growth conditions

culture medium

• @ref: 3991
• name: DESULFOVIBRIO GABONENSIS MEDIUM (DSMZ Medium 722)
• growth: yes
• link: https://mediadive.dsmz.de/medium/722
• composition: Name: OCEANIDESULFOVIBRIO MEDIUM (DSMZ Medium 722) Composition: NaCl 50.0 g/l MgCl2 x 6 H2O 3.3 g/l Na2SO4 3.0 g/l Na-DL-lactate 2.5 g/l MgSO4 x 7 H2O 1.6 g/l Na2CO3 1.5 g/l NH4Cl 0.3 g/l KCl 0.3 g/l KH2PO4 0.2 g/l Na2S x 9 H2O 0.2 g/l Yeast extract 0.1 g/l CaCl2 x 2 H2O 0.1 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l D-(+)-biotin 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

culture temp

• @ref: 3991
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 3991
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 3991
• sample type: water sample from oil pipeline
• country: Gabon
• origin.country: GAB
• continent: Africa

isolation source categories

• Cat1: #Engineered
• Cat2: #Industrial
• Cat3: #Engineered product

Safety information

risk assessment

• @ref: 3991
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 3991
• description: Desulfovibrio gabonensis 16S ribosomal RNA gene, complete sequence
• accession: U31080
• length: 1417
• database: ena
• NCBI tax ID: 42056

GC content

• @ref: 3991
• GC-content: 59.5
• method: high performance liquid chromatography (HPLC)

External links

@ref: 3991

culture collection no.: DSM 10636, SEBR 2840, ATCC 700201

straininfo link

• @ref: 73628
• straininfo: 405546

literature

• topic: Phylogeny
• Pubmed-ID: 8782680
• title: Desulfovibrio gabonensis sp. nov., a new moderately halophilic sulfate-reducing bacterium isolated from an oil pipeline.
• authors: Tardy-Jacquenod C, Magot M, Laigret F, Kaghad M, Patel BK, Guezennec J, Matheron R, Caumette P
• journal: Int J Syst Bacteriol
• DOI: 10.1099/00207713-46-3-710
• year: 1996
• mesh: Base Sequence, DNA, Bacterial, Desulfovibrio/*classification/isolation & purification/physiology/ultrastructure, Fuel Oils/*microbiology, Lipids/analysis, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Pigments, Biological, RNA, Bacterial, RNA, Ribosomal, 16S, Sulfates/metabolism
• topic2: Genetics

Reference