Strain identifier

BacDive ID: 412

Type strain: No

Species: Alicyclobacillus hesperidum

Strain Designation: FR-1b

Strain history: <- M. F. Nobre, Univ. Coimbra; FR-1b

NCBI tax ID(s): 89784 (species)

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General

@ref: 4808

BacDive-ID: 412

DSM-Number: 12766

keywords: 16S sequence, Bacteria, thermophilic

description: Alicyclobacillus hesperidum FR-1b is a thermophilic bacterium that was isolated from solfataric soil.

NCBI tax id

  • NCBI tax id: 89784
  • Matching level: species

strain history

  • @ref: 4808
  • history: <- M. F. Nobre, Univ. Coimbra; FR-1b

doi: 10.13145/bacdive412.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Alicyclobacillaceae
  • genus: Alicyclobacillus
  • species: Alicyclobacillus hesperidum
  • full scientific name: Alicyclobacillus hesperidum Albuquerque et al. 2000

@ref: 4808

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Alicyclobacillaceae

genus: Alicyclobacillus

species: Alicyclobacillus hesperidum

full scientific name: Alicyclobacillus hesperidum Albuquerque et al. 2000

strain designation: FR-1b

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4808
  • name: ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/402
  • composition: Name: ALICYCLOBACILLUS MEDIUM (DSMZ Medium 402) Composition: Agar 15.0 g/l Glucose 5.0 g/l KH2PO4 3.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 4808
  • growth: positive
  • type: growth
  • temperature: 50
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 4808
  • sample type: solfataric soil
  • geographic location: Island of Sao Miguel, Azores
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Volcanic

taxonmaps

  • @ref: 69479
  • File name: preview.99_7326.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_313;96_2480;97_4206;98_5373;99_7326&stattab=map
  • Last taxonomy: Alicyclobacillus
  • 16S sequence: AB059679
  • Sequence Identity:
  • Total samples: 1443
  • soil counts: 730
  • aquatic counts: 153
  • animal counts: 406
  • plant counts: 154

Safety information

risk assessment

  • @ref: 4808
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Alicyclobacillus hesperidum gene for 16S rRNA, strain:DSM 12766
  • accession: AB059679
  • length: 1517
  • database: ena
  • NCBI tax ID: 89784

External links

@ref: 4808

culture collection no.: DSM 12766

straininfo link

  • @ref: 70092
  • straininfo: 49352

literature

  • topic: Phylogeny
  • Pubmed-ID: 10758847
  • title: Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of Sao Miguel in the Azores.
  • authors: Albuquerque L, Rainey FA, Chung AP, Sunna A, Nobre MF, Grote R, Antranikian G, da Costa MS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-50-2-451
  • year: 2000
  • mesh: Azores, Bacterial Typing Techniques, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Rods/*classification/genetics/*isolation & purification/physiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4808Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12766)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12766
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70092Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49352.1StrainInfo: A central database for resolving microbial strain identifiers