Strain identifier
BacDive ID: 4115
Type strain: 
Species: Nitratidesulfovibrio termitidis
Strain Designation: HI1
Strain history: <- M. Trinkerl, Universität Ulm, Angewandte Mikrobiologie, Ulm, Germany; HI1 <- M. Trinkerl {1988}
NCBI tax ID(s): 42252 (species)
version 8.1 (current version)
General
@ref: 1985
BacDive-ID: 4115
DSM-Number: 5308
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Nitratidesulfovibrio termitidis HI1 is an anaerobe, mesophilic bacterium that was isolated from hindgut of the termite Heterotermes indicola.
NCBI tax id
- NCBI tax id: 42252
- Matching level: species
strain history
- @ref: 1985
- history: <- M. Trinkerl, Universität Ulm, Angewandte Mikrobiologie, Ulm, Germany; HI1 <- M. Trinkerl {1988}
doi: 10.13145/bacdive4115.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Nitratidesulfovibrio
- species: Nitratidesulfovibrio termitidis
- full scientific name: Nitratidesulfovibrio termitidis (Trinkerl et al. 1991) Waite et al. 2020
synonyms
@ref synonym 20215 Desulfovibrio termitidis 20215 Cupidesulfovibrio termitidis
@ref: 1985
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Cupidesulfovibrio
species: Cupidesulfovibrio termitidis
full scientific name: Cupidesulfovibrio termitidis (Trinkerl et al. 1991) Wan et al. 2021
strain designation: HI1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1985
- name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)
- growth: yes
- link: https://mediadive.dsmz.de/medium/63
- composition: Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 1985
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1985
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1985
- sample type: hindgut of the termite Heterotermes indicola
- host species: Heterotermes indicola
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 1985
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1985
- description: D.termitidis DNA for 16S ribosomal RNA
- accession: X87409
- length: 1506
- database: ena
- NCBI tax ID: 644897
Genome sequences
- @ref: 66792
- description: Cupidesulfovibrio termitidis HI1
- accession: GCA_000504305
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 644897
GC content
| @ref | GC-content | method |
|---|---|---|
| 1985 | 68.0 | high performance liquid chromatography (HPLC) |
| 1985 | 67.0 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.644 | no |
| flagellated | no | 60.3 | no |
| gram-positive | no | 98.788 | no |
| anaerobic | yes | 98.219 | yes |
| halophile | no | 82.831 | no |
| spore-forming | no | 95.007 | no |
| thermophile | no | 96.016 | yes |
| glucose-util | no | 66.104 | no |
| aerobic | no | 96.895 | yes |
| glucose-ferment | no | 79.974 | no |
External links
@ref: 1985
culture collection no.: DSM 5308, ATCC 49858, VKM B-1765
straininfo link
- @ref: 73618
- straininfo: 45249
literature
- topic: Phylogeny
- Pubmed-ID: 33406030
- title: Cupidesulfovibrio liaohensis gen. nov., sp. nov., a novel sulphate-reducing bacterium isolated from an oil reservoir and reclassification of Desulfovibrio oxamicus and Desulfovibrio termitidis as Cupidesulfovibrio oxamicus comb. nov. and Cupidesulfovibrio termitidis comb. nov.
- authors: Wan YY, Luo N, Liu XL, Lai QL, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004618
- year: 2021
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Desulfovibrio/classification, Desulfovibrionaceae/*classification/isolation & purification, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfates/metabolism, Sulfur-Reducing Bacteria/classification/isolation & purification
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1985 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5308) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5308 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 73618 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45249.1 | StrainInfo: A central database for resolving microbial strain identifiers |