Strain identifier
BacDive ID: 4106
Type strain: 
Species: Nitratidesulfovibrio vulgaris
Strain Designation: 5770
Strain history: <- H. Biebl <- F. Widdel, 5770
NCBI tax ID(s): 881 (species)
version 8.1 (current version)
General
@ref: 618
BacDive-ID: 4106
DSM-Number: 1744
keywords: Bacteria, anaerobe, mesophilic
description: Nitratidesulfovibrio vulgaris 5770 is an anaerobe, mesophilic bacterium that was isolated from marine mud.
NCBI tax id
- NCBI tax id: 881
- Matching level: species
strain history
- @ref: 618
- history: <- H. Biebl <- F. Widdel, 5770
doi: 10.13145/bacdive4106.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Nitratidesulfovibrio
- species: Nitratidesulfovibrio vulgaris
- full scientific name: Nitratidesulfovibrio vulgaris (Postgate and Campbell 1966) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio vulgaris
@ref: 618
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio vulgaris
full scientific name: Desulfovibrio vulgaris Postgate and Campbell 1966
strain designation: 5770
type strain: no
Culture and growth conditions
culture medium
- @ref: 618
- name: DESULFOBACTER MEDIUM (DSMZ Medium 193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/193
- composition: Name: DESULFOBACTER MEDIUM (DSMZ Medium 193; with strain-specific modifications) Composition: NaCl 6.97906 g/l Na2SO4 2.99102 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l MgCl2 x 6 H2O 1.29611 g/l Yeast extract 0.997009 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 618
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 618
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 618
- sample type: marine mud
- geographic location: Jadebusen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 618
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 618
- GC-content: 62.2
External links
@ref: 618
culture collection no.: DSM 1744
straininfo link
- @ref: 73609
- straininfo: 47493
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 8388770 | Rapid comparison of the cytochrome c3 gene from nine strains of Desulfovibrio vulgaris using polymerase chain reaction amplification. | Kwoh DY, Vedvick TS, McCue AF, Gevertz D | Can J Microbiol | 10.1139/m93-059 | 1993 | Amino Acid Sequence, Base Sequence, Cytochrome c Group/*genetics, Desulfovibrio vulgaris/classification/enzymology/*genetics, Molecular Sequence Data, Polymerase Chain Reaction/methods, Sequence Analysis, DNA, Sequence Homology, Amino Acid, *Sequence Homology, Nucleic Acid | Transcriptome |
| 26074892 | Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence? | Ozuolmez D, Na H, Lever MA, Kjeldsen KU, Jorgensen BB, Plugge CM | Front Microbiol | 10.3389/fmicb.2015.00492 | 2015 |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 618 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1744) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1744 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 73609 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47493.1 | StrainInfo: A central database for resolving microbial strain identifiers |