Strain identifier
BacDive ID: 4082
Type strain:
Species: Desulfovibrio giganteus
Strain Designation: 8601
Strain history: <- G. Esnault, 8601
NCBI tax ID(s): 181662 (species)
version 8.1 (current version)
General
@ref: 1590
BacDive-ID: 4082
DSM-Number: 4123
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfovibrio giganteus 8601 is an anaerobe, mesophilic bacterium that was isolated from lagoon sediment.
NCBI tax id
- NCBI tax id: 181662
- Matching level: species
strain history
- @ref: 1590
- history: <- G. Esnault, 8601
doi: 10.13145/bacdive4082.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Desulfovibrio
- species: Desulfovibrio giganteus
- full scientific name: Desulfovibrio giganteus corrig. Esnault et al. 1988
synonyms
- @ref: 20215
- synonym: Desulfobacter giganteus
@ref: 1590
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfovibrio
species: Desulfovibrio giganteus
full scientific name: Desulfovibrio giganteus Esnault et al. 1988
strain designation: 8601
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1590
- name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/195c
- composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 1590
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1590
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1590
- sample type: lagoon sediment
- geographic location: Marseille, Etang de Berre
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 1590
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1590
- description: Desulfovibrio giganteus partial 16S rRNA gene, type strain DSM 4123T
- accession: FR749898
- length: 1541
- database: ena
- NCBI tax ID: 181662
GC content
- @ref: 1590
- GC-content: 55.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 1590
culture collection no.: DSM 4123
straininfo link
- @ref: 73585
- straininfo: 47794
literature
- topic: Phylogeny
- Pubmed-ID: 25634952
- title: Characterization of Desulfovibrio biadhensis sp. nov., isolated from a thermal spring.
- authors: Fadhlaoui K, Ben Hania W, Postec A, Fauque G, Hamdi M, Ollivier B, Fardeau ML
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000088
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desulfovibrio/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Hot Springs/*microbiology, Hydrogensulfite Reductase/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tunisia
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1590 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4123) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4123 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
73585 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47794.1 | StrainInfo: A central database for resolving microbial strain identifiers |