Strain identifier

BacDive ID: 4082

Type strain: Yes

Species: Desulfovibrio giganteus

Strain Designation: 8601

Strain history: <- G. Esnault, 8601

NCBI tax ID(s): 181662 (species)

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General

@ref: 1590

BacDive-ID: 4082

DSM-Number: 4123

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfovibrio giganteus 8601 is an anaerobe, mesophilic bacterium that was isolated from lagoon sediment.

NCBI tax id

  • NCBI tax id: 181662
  • Matching level: species

strain history

  • @ref: 1590
  • history: <- G. Esnault, 8601

doi: 10.13145/bacdive4082.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Desulfovibrio
  • species: Desulfovibrio giganteus
  • full scientific name: Desulfovibrio giganteus corrig. Esnault et al. 1988
  • synonyms

    • @ref: 20215
    • synonym: Desulfobacter giganteus

@ref: 1590

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfovibrio

species: Desulfovibrio giganteus

full scientific name: Desulfovibrio giganteus Esnault et al. 1988

strain designation: 8601

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1590
  • name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/195c
  • composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 1590
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1590
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1590
  • sample type: lagoon sediment
  • geographic location: Marseille, Etang de Berre
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 1590
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1590
  • description: Desulfovibrio giganteus partial 16S rRNA gene, type strain DSM 4123T
  • accession: FR749898
  • length: 1541
  • database: ena
  • NCBI tax ID: 181662

GC content

  • @ref: 1590
  • GC-content: 55.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 1590

culture collection no.: DSM 4123

straininfo link

  • @ref: 73585
  • straininfo: 47794

literature

  • topic: Phylogeny
  • Pubmed-ID: 25634952
  • title: Characterization of Desulfovibrio biadhensis sp. nov., isolated from a thermal spring.
  • authors: Fadhlaoui K, Ben Hania W, Postec A, Fauque G, Hamdi M, Ollivier B, Fardeau ML
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000088
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desulfovibrio/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Hot Springs/*microbiology, Hydrogensulfite Reductase/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tunisia
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitle
1590Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4123)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4123
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
73585Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47794.1StrainInfo: A central database for resolving microbial strain identifiers