Strain identifier
BacDive ID: 4072
Type strain:
Species: Solidesulfovibrio carbinolicus
Strain history: <- H.J. Nanninga, EDK 82
NCBI tax ID(s): 296842 (species)
General
@ref: 1482
BacDive-ID: 4072
DSM-Number: 3852
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Solidesulfovibrio carbinolicus DSM 3852 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from anaerobic waste water treatment plant, potato starch factory.
NCBI tax id
- NCBI tax id: 296842
- Matching level: species
strain history
- @ref: 1482
- history: <- H.J. Nanninga, EDK 82
doi: 10.13145/bacdive4072.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfovibrionaceae
- genus: Solidesulfovibrio
- species: Solidesulfovibrio carbinolicus
- full scientific name: Solidesulfovibrio carbinolicus (Nanninga and Gottschal 1995) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Desulfovibrio carbinolicus
@ref: 1482
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Solidesulfovibrio
species: Solidesulfovibrio carbinolicus
full scientific name: Solidesulfovibrio carbinolicus (Nanninga and Gottschal 1995) Waite et al. 2020
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | negative | 99.909 | |
69480 | 96.909 | yes |
Culture and growth conditions
culture medium
- @ref: 1482
- name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
- growth: yes
- link: https://mediadive.dsmz.de/medium/194
- composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l Ethanol absolute 0.697906 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l Yeast extract 0.0997009 g/l Casamino acids 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 1482
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
1482 | anaerobe | |
69480 | anaerobe | 99.546 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.11
compound production
@ref | compound |
---|---|
1482 | 1,3 propanediol |
1482 | 3-OH propionate |
Isolation, sampling and environmental information
isolation
- @ref: 1482
- sample type: anaerobic waste water treatment plant, potato starch factory
- geographic location: Dekrim
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | |
#Engineered | #Waste | #Water treatment plant |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_546.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_120;96_346;97_386;98_443;99_546&stattab=map
- Last taxonomy: Desulfovibrio
- 16S sequence: DQ186201
- Sequence Identity:
- Total samples: 4211
- soil counts: 453
- aquatic counts: 2969
- animal counts: 351
- plant counts: 438
Safety information
risk assessment
- @ref: 1482
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence | DQ186201 | 1026 | ena | 296842 |
1482 | Desulfovibrio carbinolicus strain DSM 3852 16S ribosomal RNA gene, partial sequence | AY626035 | 1510 | ena | 296842 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Solidesulfovibrio carbinolicus DSM 3852 | GCA_004135975 | complete | ncbi | 296842 |
66792 | Desulfovibrio carbinolicus strain DSM 3852 | 296842.5 | complete | patric | 296842 |
66792 | Desulfovibrio carbinolicus DSM 3852 | 2841463281 | complete | img | 296842 |
GC content
- @ref: 1482
- GC-content: 65.0
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 86 | no |
motile | yes | 87.911 | no |
flagellated | no | 75.797 | no |
gram-positive | no | 98.675 | no |
anaerobic | yes | 97.177 | yes |
aerobic | no | 97.342 | no |
halophile | no | 83.104 | no |
spore-forming | no | 92.588 | no |
glucose-util | no | 53.682 | no |
thermophile | no | 92.827 | yes |
glucose-ferment | no | 80.972 | no |
External links
@ref: 1482
culture collection no.: DSM 3852, VKM B-1758
straininfo link
- @ref: 73575
- straininfo: 47768
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1482 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3852) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3852 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
73575 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47768.1 | StrainInfo: A central database for resolving microbial strain identifiers |