Archive BacDiveID:10.13145/bacdive4071.20230509.8.1

Strain identifier

BacDive ID: 4071

Type strain:

Species: Desulfocurvibacter africanus

Strain Designation: Benghazi

Strain history: <- NCIB <- K. R. Butlin, National Chemical Laboratory, Teddington, Middlesex, U.K.; Benghazi <- M. E. Adams {1950}

NCBI tax ID(s): 1121435 (strain), 873 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 1149

BacDive-ID: 4071

DSM-Number: 2603

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Desulfocurvibacter africanus Benghazi is an anaerobe, mesophilic, motile bacterium that was isolated from well water.

NCBI tax id

NCBI tax id	Matching level
873	species
1121435	strain

strain history

@ref: 1149
history: <- NCIB <- K. R. Butlin, National Chemical Laboratory, Teddington, Middlesex, U.K.; Benghazi <- M. E. Adams {1950}

doi: 10.13145/bacdive4071.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfovibrionaceae
genus: Desulfocurvibacter
species: Desulfocurvibacter africanus
full scientific name: Desulfocurvibacter africanus (Campbell et al. 1966) Spring et al. 2019
synonyms
- @ref: 20215
- synonym: Desulfovibrio africanus

@ref: 1149

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Desulfocurvibacter

species: Desulfocurvibacter africanus subsp. africanus

full scientific name: Desulfocurvibacter africanus subsp. africanus (Campbell et al. 1966) Spring et al. 2019

strain designation: Benghazi

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	yes	97.419
69480		99.996	negative

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
1149	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)	yes	https://mediadive.dsmz.de/medium/641	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641) Composition: Na-DL-lactate 2.49252 g/l Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
1149	DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)	yes	https://mediadive.dsmz.de/medium/63	Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@ref: 1149
growth: positive
type: growth
temperature: 30
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance	confidence
1149	anaerobe
69480	anaerobe	99.641

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.394

Isolation, sampling and environmental information

isolation

@ref: 1149
sample type: well water
geographic location: Benghazi
country: Libya
origin.country: LBY
continent: Africa

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic
#Engineered	#Built environment	#Water reservoir (Aquarium/pool)

taxonmaps

@ref: 69479
File name: preview.99_4979.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_498;96_2440;97_2973;98_3723;99_4979&stattab=map
Last taxonomy: Desulfocurvibacter africanus subclade
16S sequence: X99236
Sequence Identity:
Total samples: 723
soil counts: 228
aquatic counts: 198
animal counts: 197
plant counts: 100

Safety information

risk assessment

@ref: 1149
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 1149
description: D.africanus 16S rRNA gene
accession: X99236
length: 1510
database: ena
NCBI tax ID: 1121435

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Desulfocurvibacter africanus subsp. africanus DSM 2603	GCA_000422545	scaffold	ncbi	1121435
66792	Desulfovibrio africanus DSM 2603	1121435.3	wgs	patric	1121435
66792	Desulfovibrio africanus DSM 2603	2526164711	draft	img	1121435

GC content

@ref: 1149
GC-content: 61.0

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	yes	89.079	no
flagellated	no	64.677	no
gram-positive	no	98.799	no
anaerobic	yes	98.793	yes
aerobic	no	98.533	yes
halophile	no	69.123	no
spore-forming	no	92.599	no
glucose-util	no	60.552	no
thermophile	no	97.427	yes
glucose-ferment	no	84.53	no

External links

@ref: 1149

culture collection no.: DSM 2603, ATCC 19996, NCIMB 8401, VKM B-1757

straininfo link

@ref: 73574
straininfo: 37214

Reference

@id	authors	catalogue	doi/url	title
1149	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2603)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-2603
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
73574	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID37214.1	StrainInfo: A central database for resolving microbial strain identifiers

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

oxygen tolerance

spore formation

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

GC content

Genome-based predictions

predictions

External links

straininfo link

Reference