Strain identifier

BacDive ID: 4068

Type strain: No

Species: Bilophila wadsworthia

Strain Designation: RZATAU

Strain history: <- H. Laue, RZATAU

NCBI tax ID(s): 35833 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4167

BacDive-ID: 4068

DSM-Number: 11045

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Bilophila wadsworthia RZATAU is an anaerobe, mesophilic human pathogen that was isolated from anaerobic mud, sewage plant.

NCBI tax id

  • NCBI tax id: 35833
  • Matching level: species

strain history

  • @ref: 4167
  • history: <- H. Laue, RZATAU

doi: 10.13145/bacdive4068.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfovibrionales
  • family: Desulfovibrionaceae
  • genus: Bilophila
  • species: Bilophila wadsworthia
  • full scientific name: Bilophila wadsworthia Baron et al. 1990

@ref: 4167

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfovibrionales

family: Desulfovibrionaceae

genus: Bilophila

species: Bilophila wadsworthia

full scientific name: Bilophila wadsworthia Baron et al. 1990

strain designation: RZATAU

type strain: no

Morphology

colony morphology

  • @ref: 4167
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4167COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
4167FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
4167ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)yeshttps://mediadive.dsmz.de/medium/503Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503; with strain-specific modifications) Composition: D-Glucose 4.98504 g/l Na-formate 4.08043 g/l Na2CO3 1.49551 g/l Taurine 1.25148 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l 1,4-Naphthoquinone Distilled water

culture temp

  • @ref: 4167
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4167
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4167
  • sample type: anaerobic mud, sewage plant
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2428.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_322;96_1312;97_1559;98_1896;99_2428&stattab=map
  • Last taxonomy: Bilophila wadsworthia subclade
  • 16S sequence: AB117562
  • Sequence Identity:
  • Total samples: 248687
  • soil counts: 2066
  • aquatic counts: 7361
  • animal counts: 238547
  • plant counts: 713

Safety information

risk assessment

  • @ref: 4167
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4167
  • description: Bilophila wadsworthia gene for 16S rRNA, partial sequence, strain:NB-12
  • accession: AB117562
  • length: 1445
  • database: ena
  • NCBI tax ID: 35833

External links

@ref: 4167

culture collection no.: DSM 11045

straininfo link

  • @ref: 73571
  • straininfo: 49002

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism9143131Taurine reduction in anaerobic respiration of Bilophila wadsworthia RZATAU.Laue H, Denger K, Cook AMAppl Environ Microbiol10.1128/aem.63.5.2016-2021.19971997Acetates/metabolism, Alanine/biosynthesis, Ammonia/metabolism, Anaerobiosis, Bioreactors, Cysteic Acid/metabolism, DNA, Bacterial/analysis, Formates/metabolism, Gram-Negative Anaerobic Bacteria/classification/genetics/*metabolism, Isethionic Acid/metabolism, Lactic Acid/metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/microbiology, Sulfates/metabolism, Sulfides/metabolism, Sulfites/metabolism, Taurine/*metabolism, Thiosulfates/metabolismPhylogeny
Enzymology11041346Purification, properties and primary structure of alanine dehydrogenase involved in taurine metabolism in the anaerobe Bilophila wadsworthia.Laue H, Cook AMArch Microbiol10.1007/s0020300001902000Alanine Dehydrogenase, *Amino Acid Oxidoreductases/chemistry/genetics/isolation & purification/metabolism, Amino Acid Sequence, Bacteria, Anaerobic/*enzymology/genetics/growth & development, Catalysis, DNA, Bacterial/genetics, Deltaproteobacteria/*enzymology/genetics/growth & development, Kinetics, Molecular Sequence Data, Sequence Analysis, DNA, Taurine/*metabolismMetabolism
Metabolism11082195Biochemical and molecular characterization of taurine:pyruvate aminotransferase from the anaerobe Bilophila wadsworthia.Laue H, Cook AMEur J Biochem10.1046/j.1432-1033.2000.01782.x2000Butyrates/metabolism, Chromatography, Gel, Chromatography, High Pressure Liquid, Cysteine/metabolism, Deltaproteobacteria/*enzymology, Electrophoresis, Polyacrylamide Gel, Kinetics, Models, Chemical, Molecular Sequence Data, Molecular Weight, Open Reading Frames, Oxaloacetic Acid/metabolism, Pyridoxal Phosphate/pharmacology, Taurine/*analogs & derivatives/metabolism, Time Factors, Transaminases/*chemistry/*genetics, Ultraviolet Rays, beta-Alanine/metabolismEnzymology
Enzymology11160104Dissimilatory sulfite reductase (desulfoviridin) of the taurine-degrading, non-sulfate-reducing bacterium Bilophila wadsworthia RZATAU contains a fused DsrB-DsrD subunit.Laue H, Friedrich M, Ruff J, Cook AMJ Bacteriol10.1128/JB.183.5.1727-1733.20012001Amino Acid Sequence, Anaerobiosis, Deltaproteobacteria/*enzymology/genetics/growth & development, Electrophoresis, Polyacrylamide Gel, Molecular Sequence Data, Oxidoreductases/metabolism, Oxidoreductases Acting on Sulfur Group Donors/*genetics/isolation & purification/*metabolism, Phylogeny, Sequence Analysis, DNA, Sulfates/metabolism, Sulfites/metabolism, Taurine/*metabolismMetabolism
Metabolism31177942The 'in vivo lifestyle' of bile acid 7alpha-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.Ridlon JM, Devendran S, Alves JM, Doden H, Wolf PG, Pereira GV, Ly L, Volland A, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Hernandez AG, Fields CJ, Wright CL, Kakiyama G, Cann I, Kashyap P, McCracken V, Gaskins HRGut Microbes10.1080/19490976.2019.16181732019Animals, Bacteria, Anaerobic/*genetics/*metabolism, Bacteroides/genetics/metabolism, Bile Acids and Salts/*metabolism, Bilophila/genetics/metabolism, Cecum/*microbiology, Cholic Acids/metabolism, Clostridium/genetics/metabolism, Gene Expression Regulation, Bacterial, Genome, Bacterial, Genomics, Germ-Free Life, Humans, *Metabolome, Mice, Mice, Inbred C57BL, Microbiota, Operon, RNA-Seq, *Transcriptome, Up-RegulationGenetics

Reference

@idauthorscataloguedoi/urltitle
4167Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11045)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11045
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73571Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49002.1StrainInfo: A central database for resolving microbial strain identifiers