Strain identifier
BacDive ID: 4067
Type strain:
Species: Desulfonatronum thiosulfatophilum
Strain Designation: ASO4-2
Strain history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ASO4-2 <- D. Y. Sorokin {2007}
NCBI tax ID(s): 617002 (species)
General
@ref: 15624
BacDive-ID: 4067
DSM-Number: 21338
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfonatronum thiosulfatophilum ASO4-2 is an anaerobe, mesophilic bacterium that was isolated from sediments from hypersaline soda lake.
NCBI tax id
- NCBI tax id: 617002
- Matching level: species
strain history
- @ref: 15624
- history: <- D. Y. Sorokin, Dept. Biotechnol., Delft Univ. Technol., Netherlands; ASO4-2 <- D. Y. Sorokin {2007}
doi: 10.13145/bacdive4067.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfovibrionales
- family: Desulfonatronaceae
- genus: Desulfonatronum
- species: Desulfonatronum thiosulfatophilum
- full scientific name: Desulfonatronum thiosulfatophilum Sorokin et al. 2011
@ref: 15624
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfovibrionales
family: Desulfonatronaceae
genus: Desulfonatronum
species: Desulfonatronum thiosulfatophilum
full scientific name: Desulfonatronum thiosulfatophilum Sorokin et al. 2011
strain designation: ASO4-2
type strain: yes
Morphology
colony morphology
- @ref: 15624
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 15624
- name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1166
- composition: Name: DESULFONATRONUM THIOAUTOTROPHICUM MEDIUM (DSMZ Medium 1166) Composition: Na2CO3 21.9342 g/l NaHCO3 7.97607 g/l NaCl 5.98205 g/l Na2S2O3 x 5 H2O 4.98504 g/l Na-formate 3.38983 g/l Na2SO4 2.79163 g/l K2HPO4 0.997009 g/l Na-pyruvate 0.548355 g/l Na2S x 9 H2O 0.239282 g/l MgCl2 x 6 H2O 0.199402 g/l NH4Cl 0.199402 g/l Yeast extract 0.0498504 g/l EDTA 0.00498504 g/l FeSO4 x 7 H2O 0.00219342 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000199402 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnSO4 x 7 H2O 9.97009e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l NiCl2 x 6 H2O 2.99103e-05 g/l MnCl2 x 4 H2O 2.99103e-05 g/l H3BO3 2.99103e-05 g/l CuCl2 x 2 H2O 2.99103e-05 g/l Na2MoO4 x 2 H2O 2.99103e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 15624
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 15624
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 15624
- sample type: sediments from hypersaline soda lake
- geographic location: Altai, south-eastern Siberia, Kulunda Steppe, soda lake Picturesque
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
#Condition | #Alkaline | |
#Condition | #Saline | |
#Environmental | #Aquatic | #Non-marine Saline and Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_165293.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_453;96_2133;97_2569;98_108555;99_165293&stattab=map
- Last taxonomy: Desulfonatronum thiosulfatophilum subclade
- 16S sequence: FJ469578
- Sequence Identity:
- Total samples: 129
- soil counts: 18
- aquatic counts: 105
- animal counts: 6
Safety information
risk assessment
- @ref: 15624
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15624
- description: Desulfonatronum thiosulfatophilum strain ASO4-2 16S ribosomal RNA gene, partial sequence
- accession: FJ469578
- length: 1522
- database: ena
- NCBI tax ID: 617002
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Desulfonatronum thiosulfatophilum ASO4-2 | GCA_900104215 | contig | ncbi | 617002 |
66792 | Desulfonatronum thiosulfatophilum ASO4-2 | 2596583601 | draft | img | 617002 |
GC content
- @ref: 15624
- GC-content: 57.0
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 15624
culture collection no.: DSM 21338, UNIQEM U757
straininfo link
- @ref: 73570
- straininfo: 405461
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15624 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21338) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21338 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
73570 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405461.1 | StrainInfo: A central database for resolving microbial strain identifiers |