Archive BacDiveID:10.13145/bacdive4001.20230509.8.1

Strain identifier

BacDive ID: 4001

Type strain:

Species: Desulfosalsimonas propionicica

Strain Designation: PropA

Strain history: <- K. Ingvorsen, Århus Univ., Denmark; PropA <- T. F. Jakobsen {2005}

NCBI tax ID(s): 332175 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 7161

BacDive-ID: 4001

DSM-Number: 17721

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Desulfosalsimonas propionicica PropA is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from extreme hypersaline sediment.

NCBI tax id

NCBI tax id: 332175
Matching level: species

strain history

@ref: 7161
history: <- K. Ingvorsen, Århus Univ., Denmark; PropA <- T. F. Jakobsen {2005}

doi: 10.13145/bacdive4001.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfosalsimonas
species: Desulfosalsimonas propionicica
full scientific name: Desulfosalsimonas propionicica Kjeldsen et al. 2010

@ref: 7161

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfosalsimonas

species: Desulfosalsimonas propionicica

full scientific name: Desulfosalsimonas propionicica Kjeldsen et al. 2010

strain designation: PropA

type strain: yes

Morphology

cell morphology

@ref: 29518
gram stain: negative
cell length: 3 µm
cell width: 0.9 µm
cell shape: rod-shaped

Culture and growth conditions

culture medium

@ref: 7161
name: DESULFOSALSIMONAS MEDIUM (DSMZ Medium 1056)
growth: yes
link: https://mediadive.dsmz.de/medium/1056
composition: Name: DESULFOSALSIMONAS MEDIUM (DSMZ Medium 1056) Composition: NaCl 59.8205 g/l MgSO4 x 7 H2O 9.97009 g/l KCl 5.98205 g/l Na-propionate 1.49551 g/l Na2CO3 1.49551 g/l NH4Cl 0.997009 g/l Yeast extract 0.498504 g/l CaCl2 x 2 H2O 0.398804 g/l Na2S x 9 H2O 0.299103 g/l KH2PO4 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
7161	positive	growth	37	mesophilic
29518	positive	growth	15-40
29518	positive	optimum	40	thermophilic

culture pH

@ref	ability	type	pH
29518	positive	growth	6-8.3
29518	positive	optimum	7

Physiology and metabolism

oxygen tolerance

@ref	oxygen tolerance
7161	anaerobe
29518	anaerobe

spore formation

@ref: 29518
spore formation: no

Isolation, sampling and environmental information

isolation

@ref: 7161
sample type: extreme hypersaline sediment
geographic location: Utah, northern arm of Great Salt Lake
country: USA
origin.country: USA
continent: North America

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline

taxonmaps

@ref: 69479
File name: preview.99_28654.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_876;96_14144;97_17237;98_21409;99_28654&stattab=map
Last taxonomy: Desulfosalsimonas propionicica subclade
16S sequence: DQ067422
Sequence Identity:
Total samples: 114
soil counts: 6
aquatic counts: 107
plant counts: 1

Safety information

risk assessment

@ref: 7161
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 7161
description: Desulfosalsimonas propionicica strain PropA 16S ribosomal RNA gene, partial sequence
accession: DQ067422
length: 1469
database: ena
NCBI tax ID: 332175

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Desulfosalsimonas propionicica DSM 17721	GCA_013761005	scaffold	ncbi	332175
66792	Desulfosalsimonas propionicica strain DSM 17721	332175.3	wgs	patric	332175
66792	Desulfosalsimonas propionicica DSM 17721	2861192947	draft	img	332175

GC content

@ref	GC-content	method
7161	54.1	high performance liquid chromatography (HPLC)
29518	54.1

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	yes	86.924	no
flagellated	no	79.012	no
gram-positive	no	99.091	no
anaerobic	yes	99.366	yes
aerobic	no	97.229	yes
halophile	no	56.583	no
spore-forming	no	92.813	no
thermophile	no	71.6	no
glucose-util	yes	52.356	no
glucose-ferment	no	87.865	no

External links

@ref: 7161

culture collection no.: DSM 17721, VKM B-2385

straininfo link

@ref: 73506
straininfo: 399971

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	19666789	Desulfosalsimonas propionicica gen. nov., sp. nov., a halophilic, sulfate-reducing member of the family Desulfobacteraceae isolated from a salt-lake sediment.	Kjeldsen KU, Jakobsen TF, Glastrup J, Ingvorsen K	Int J Syst Evol Microbiol	10.1099/ijs.0.014746-0	2009	Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Deltaproteobacteria/classification/genetics/isolation & purification/physiology, Fresh Water/chemistry/microbiology, Genes, rRNA, Genotype, Geologic Sediments/chemistry/microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Species Specificity, Sulfates/metabolism, Sulfur-Reducing Bacteria/classification/genetics/isolation & purification/physiology, Utah	Genetics
Phylogeny	22039002	Desulfonatronobacter acidivorans gen. nov., sp. nov. and Desulfobulbus alkaliphilus sp. nov., haloalkaliphilic heterotrophic sulfate-reducing bacteria from soda lakes.	Sorokin DY, Tourova TP, Panteleeva AN, Muyzer G	Int J Syst Evol Microbiol	10.1099/ijs.0.029777-0	2011	Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deltaproteobacteria/classification/genetics/isolation & purification, Fatty Acids/analysis, Geologic Sediments/microbiology, Heterotrophic Processes, Lakes/microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/classification/genetics/isolation & purification	Enzymology

Reference

@id	authors	catalogue	doi/url	title	ID_cross_reference	pubmed
7161	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17721)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-17721
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29518	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	25915	28776041
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
73506	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID399971.1	StrainInfo: A central database for resolving microbial strain identifiers