Strain identifier
BacDive ID: 3999
Type strain: 
Species: Desulfobotulus sapovorans
Strain history: <- F. Widdel, strain "Lindhorst" (1pa3)
NCBI tax ID(s): 1121401 (strain), 888 (species)
version 8.1 (current version)
General
@ref: 691
BacDive-ID: 3999
DSM-Number: 2055
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfobotulus sapovorans DSM 2055 is an anaerobe, mesophilic bacterium that was isolated from freshwater mud.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 888 | species |
| 1121401 | strain |
strain history
- @ref: 691
- history: <- F. Widdel, strain "Lindhorst" (1pa3)
doi: 10.13145/bacdive3999.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfobotulus
- species: Desulfobotulus sapovorans
- full scientific name: Desulfobotulus sapovorans (Widdel 1981) Kuever et al. 2009
synonyms
- @ref: 20215
- synonym: Desulfovibrio sapovorans
@ref: 691
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfobotulus
species: Desulfobotulus sapovorans
full scientific name: Desulfobotulus sapovorans (Widdel 1981) Kuever et al. 2009
type strain: yes
Culture and growth conditions
culture medium
- @ref: 691
- name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
- growth: yes
- link: https://mediadive.dsmz.de/medium/194
- composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l Na-butyrate 0.697906 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l Na-caproate 0.299103 g/l KH2PO4 0.199402 g/l Sodium octanoate 0.149551 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 691
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 691
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 691
- sample type: freshwater mud
- geographic location: Hannover, Lindhorst
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_117933.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2042;96_46658;97_59915;98_79604;99_117933&stattab=map
- Last taxonomy: Desulfobotulus sapovorans
- 16S sequence: FJ789839
- Sequence Identity:
- Total samples: 886
- soil counts: 109
- aquatic counts: 713
- animal counts: 59
- plant counts: 5
Safety information
risk assessment
- @ref: 691
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Desulfobotulus sapovorans strain ATCC 33892 16S ribosomal RNA gene, partial sequence | FJ789839 | 1506 | ena | 888 |
| 20218 | Desulfobotulus sapovorans strain 1pa3 16S ribosomal RNA gene, partial sequence | M34402 | 1398 | ena | 888 |
| 691 | Desulfobotulus sapovorans partial 16S rRNA gene, type strain DSM2055T | FR733666 | 1553 | ena | 888 |
Genome sequences
- @ref: 66792
- description: Desulfobotulus sapovorans DSM 2055
- accession: 2574180434
- assembly level: draft
- database: img
- NCBI tax ID: 1121401
GC content
- @ref: 691
- GC-content: 52.7
External links
@ref: 691
culture collection no.: DSM 2055, ATCC 33892, VKM B-1803, Lindhorst (1pa3)
straininfo link
- @ref: 73504
- straininfo: 2186
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 691 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2055) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2055 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73504 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID2186.1 | StrainInfo: A central database for resolving microbial strain identifiers |