Strain identifier

BacDive ID: 3985

Type strain: Yes

Species: Desulfofaba hansenii

Strain Designation: P1

Strain history: <- K. Finster, University of Aarhus, Department of Microbial Ecology, Institute of Biological Sciences, Denmark; P1 <- K. Finster {1997}

NCBI tax ID(s): 157842 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4775

BacDive-ID: 3985

DSM-Number: 12642

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Desulfofaba hansenii P1 is an anaerobe, mesophilic, motile bacterium that was isolated from surface-sterilized roots of the marine macrophyte Zostera marina.

NCBI tax id

  • NCBI tax id: 157842
  • Matching level: species

strain history

  • @ref: 4775
  • history: <- K. Finster, University of Aarhus, Department of Microbial Ecology, Institute of Biological Sciences, Denmark; P1 <- K. Finster {1997}

doi: 10.13145/bacdive3985.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfofaba
  • species: Desulfofaba hansenii
  • full scientific name: Desulfofaba hansenii (Finster et al. 2001) Abildgaard et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Desulfomusa hansenii

@ref: 4775

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfofaba

species: Desulfofaba hansenii

full scientific name: Desulfofaba hansenii (Finster et al. 2001) Abildgaard et al. 2004

strain designation: P1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.617
6948099.999negative

Culture and growth conditions

culture medium

  • @ref: 4775
  • name: DESULFOMUSA HANSENII MEDIUM (DSMZ Medium 916)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/916
  • composition: Name: DESULFOFABA HANSENII MEDIUM (DSMZ Medium 916) Composition: NaCl 19.8412 g/l MgCl2 x 6 H2O 10.5159 g/l CaCl2 x 2 H2O 1.50794 g/l Na2SO4 1.40873 g/l Na2CO3 1.24008 g/l Na-propionate 0.952381 g/l KCl 0.664682 g/l FeCl2 x 4 H2O 0.515873 g/l NH4Cl 0.0992062 g/l MgSO4 x 7 H2O 0.0198412 g/l KH2PO4 0.00992062 g/l HCl 0.00248016 g/l Sodium resazurin 0.000496032 g/l NaOH 0.000496032 g/l CoCl2 x 6 H2O 0.000188492 g/l Pyridoxine hydrochloride 9.92064e-05 g/l MnCl2 x 4 H2O 9.92064e-05 g/l ZnCl2 6.94444e-05 g/l Calcium D-(+)-pantothenate 4.96032e-05 g/l (DL)-alpha-Lipoic acid 4.96032e-05 g/l Thiamine HCl 4.96032e-05 g/l Riboflavin 4.96032e-05 g/l Nicotinic acid 4.96032e-05 g/l p-Aminobenzoic acid 4.96032e-05 g/l Na2MoO4 x 2 H2O 3.57143e-05 g/l NiCl2 x 6 H2O 2.38095e-05 g/l Folic acid 1.98413e-05 g/l Biotin 1.98413e-05 g/l H3BO3 5.95238e-06 g/l Na2WO4 x 2 H2O 3.96825e-06 g/l Na2SeO3 x 5 H2O 2.97619e-06 g/l CuCl2 x 2 H2O 1.98413e-06 g/l Vitamin B12 9.92064e-07 g/l Distilled water

culture temp

  • @ref: 4775
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
4775anaerobe
69480anaerobe98.648

spore formation

@refspore formationconfidence
69481no100
69480no99.932

Isolation, sampling and environmental information

isolation

  • @ref: 4775
  • sample type: surface-sterilized roots of the marine macrophyte Zostera marina
  • host species: Zostera marina
  • geographic location: Aarhus Bay
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Aquatic plant
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_130401.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3074;96_44752;97_65396;98_87296;99_130401&stattab=map
  • Last taxonomy: Desulfofaba hansenii subclade
  • 16S sequence: AF321820
  • Sequence Identity:
  • Total samples: 290
  • soil counts: 1
  • aquatic counts: 288
  • plant counts: 1

Safety information

risk assessment

  • @ref: 4775
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4775
  • description: Desulfomusa hansenii 16S ribosomal RNA gene, partial sequence
  • accession: AF321820
  • length: 1519
  • database: ena
  • NCBI tax ID: 157842

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfofaba hansenii strain P1157842.3wgspatric157842
66792Desulfofaba hansenii DSM 126422740891818draftimg157842

GC content

  • @ref: 4775
  • GC-content: 53.5
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes79.104no
gram-positiveno99.132no
anaerobicyes96.734yes
aerobicno95.056no
halophileno72.801no
spore-formingno80.321no
glucose-utilno50no
flagellatedno57.87no
thermophileno98.891no
glucose-fermentno86.236no

External links

@ref: 4775

culture collection no.: DSM 12642, ATCC 700811

straininfo link

  • @ref: 73491
  • straininfo: 88566

literature

  • topic: Phylogeny
  • Pubmed-ID: 11760947
  • title: Desulfomusa hansenii gen. nov., sp. nov., a novel marine propionate-degrading, sulfate-reducing bacterium isolated from Zostera marina roots.
  • authors: Finster K, Thomsen TR, Ramsing NB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-6-2055
  • year: 2001
  • mesh: Biodegradation, Environmental, DNA, Ribosomal/analysis, Deltaproteobacteria/*classification/genetics/isolation & purification/physiology, Hydrogensulfite Reductase, Molecular Sequence Data, Oxidation-Reduction, Oxidoreductases Acting on Sulfur Group Donors/genetics, Plant Roots/*microbiology, Poaceae/*microbiology, Polymerase Chain Reaction, Propionates/*metabolism, RNA, Ribosomal/genetics, Seawater, Sulfates/*metabolism
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4775Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12642)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12642
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73491Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88566.1StrainInfo: A central database for resolving microbial strain identifiers