Strain identifier

BacDive ID: 3982

Type strain: Yes

Species: Desulfococcus biacutus

Strain Designation: KMRActS

Strain history: <- H. Platen, KMRActS

NCBI tax ID(s): 125602 (species)

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General

@ref: 2145

BacDive-ID: 3982

DSM-Number: 5651

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfococcus biacutus KMRActS is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage digestor.

NCBI tax id

  • NCBI tax id: 125602
  • Matching level: species

strain history

  • @ref: 2145
  • history: <- H. Platen, KMRActS

doi: 10.13145/bacdive3982.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfococcus
  • species: Desulfococcus biacutus
  • full scientific name: Desulfococcus biacutus Platen et al. 1991

@ref: 2145

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfococcus

species: Desulfococcus biacutus

full scientific name: Desulfococcus biacutus Platen et al. 1991

strain designation: KMRActS

type strain: yes

Morphology

colony morphology

  • @ref: 2145
  • incubation period: 8-14 days

Culture and growth conditions

culture medium

  • @ref: 2145
  • name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/194
  • composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na-3-hydroxybutyrate 1.49551 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 2145
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2145
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2145
  • sample type: anaerobic sewage digestor
  • geographic location: Marburg
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Engineered#Waste#Wastewater
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_152525.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_339;96_1406;97_49687;98_65346;99_152525&stattab=map
  • Last taxonomy: Desulfococcus biacutus subclade
  • 16S sequence: AJ277887
  • Sequence Identity:
  • Total samples: 1714
  • soil counts: 119
  • aquatic counts: 1489
  • animal counts: 85
  • plant counts: 21

Safety information

risk assessment

  • @ref: 2145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2145
  • description: Desulfococcus biacutus 16S rRNA gene, strain DSM 5651T
  • accession: AJ277887
  • length: 1515
  • database: ena
  • NCBI tax ID: 125602

Genome sequences

  • @ref: 66792
  • description: Desulfococcus biacutus KMRActS
  • accession: 2512047085
  • assembly level: draft
  • database: img
  • NCBI tax ID: 125602

GC content

  • @ref: 2145
  • GC-content: 56.5

External links

@ref: 2145

culture collection no.: DSM 5651

straininfo link

  • @ref: 73488
  • straininfo: 47965

literature

  • topic: Metabolism
  • Pubmed-ID: 2244787
  • title: Anaerobic degradation of acetone by Desulfococcus biacutus spec. nov.
  • authors: Platen H, Temmes A, Schink B
  • journal: Arch Microbiol
  • DOI: 10.1007/BF00276531
  • year: 1990
  • mesh: 3-Hydroxybutyric Acid, Acetoacetates/metabolism, Acetone/*metabolism, Bacteria, Anaerobic/growth & development/isolation & purification/*metabolism, Biodegradation, Environmental, Culture Media, Fresh Water, Hydroxybutyrates/metabolism, *Sewage, *Waste Disposal, Fluid, *Water Microbiology
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitle
2145Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5651)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5651
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73488Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47965.1StrainInfo: A central database for resolving microbial strain identifiers