Strain identifier
BacDive ID: 3982
Type strain:
Species: Desulfococcus biacutus
Strain Designation: KMRActS
Strain history: <- H. Platen, KMRActS
NCBI tax ID(s): 125602 (species)
General
@ref: 2145
BacDive-ID: 3982
DSM-Number: 5651
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfococcus biacutus KMRActS is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage digestor.
NCBI tax id
- NCBI tax id: 125602
- Matching level: species
strain history
- @ref: 2145
- history: <- H. Platen, KMRActS
doi: 10.13145/bacdive3982.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfococcus
- species: Desulfococcus biacutus
- full scientific name: Desulfococcus biacutus Platen et al. 1991
@ref: 2145
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfococcus
species: Desulfococcus biacutus
full scientific name: Desulfococcus biacutus Platen et al. 1991
strain designation: KMRActS
type strain: yes
Morphology
colony morphology
- @ref: 2145
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 2145
- name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
- growth: yes
- link: https://mediadive.dsmz.de/medium/194
- composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na-3-hydroxybutyrate 1.49551 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 2145
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2145
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 2145
- sample type: anaerobic sewage digestor
- geographic location: Marburg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Biodegradation | #Anaerobic digestor |
#Engineered | #Waste | #Wastewater |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_152525.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_339;96_1406;97_49687;98_65346;99_152525&stattab=map
- Last taxonomy: Desulfococcus biacutus subclade
- 16S sequence: AJ277887
- Sequence Identity:
- Total samples: 1714
- soil counts: 119
- aquatic counts: 1489
- animal counts: 85
- plant counts: 21
Safety information
risk assessment
- @ref: 2145
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2145
- description: Desulfococcus biacutus 16S rRNA gene, strain DSM 5651T
- accession: AJ277887
- length: 1515
- database: ena
- NCBI tax ID: 125602
Genome sequences
- @ref: 66792
- description: Desulfococcus biacutus KMRActS
- accession: 2512047085
- assembly level: draft
- database: img
- NCBI tax ID: 125602
GC content
- @ref: 2145
- GC-content: 56.5
External links
@ref: 2145
culture collection no.: DSM 5651
straininfo link
- @ref: 73488
- straininfo: 47965
literature
- topic: Metabolism
- Pubmed-ID: 2244787
- title: Anaerobic degradation of acetone by Desulfococcus biacutus spec. nov.
- authors: Platen H, Temmes A, Schink B
- journal: Arch Microbiol
- DOI: 10.1007/BF00276531
- year: 1990
- mesh: 3-Hydroxybutyric Acid, Acetoacetates/metabolism, Acetone/*metabolism, Bacteria, Anaerobic/growth & development/isolation & purification/*metabolism, Biodegradation, Environmental, Culture Media, Fresh Water, Hydroxybutyrates/metabolism, *Sewage, *Waste Disposal, Fluid, *Water Microbiology
- topic2: Cultivation
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2145 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5651) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5651 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
73488 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47965.1 | StrainInfo: A central database for resolving microbial strain identifiers |