Archive BacDiveID:10.13145/bacdive3980.20230509.8.1

Strain identifier

BacDive ID: 3980

Type strain:

Species: Desulfocella halophila

Strain Designation: GSL-But2

Strain history: CIP <- 2002, K. Ingvorsen, Inst. Biol. Sci., Univ. of Aarhus, Denmark: strain GSL-But2 <- DSMZ <- ATCC

NCBI tax ID(s): 66835 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4476

BacDive-ID: 3980

DSM-Number: 11763

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Desulfocella halophila GSL-But2 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from surface sediment.

NCBI tax id

NCBI tax id: 66835
Matching level: species

strain history

@ref	history
4476	<- K. K. Brandt, University of Aarhus, Department of Microbial Ecology, Denmark; GSL-But2 <- K. K. Brandt {1995}
119807	CIP <- 2002, K. Ingvorsen, Inst. Biol. Sci., Univ. of Aarhus, Denmark: strain GSL-But2 <- DSMZ <- ATCC

doi: 10.13145/bacdive3980.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfocella
species: Desulfocella halophila
full scientific name: Desulfocella halophila Brandt et al. 1999

@ref: 4476

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfocella

species: Desulfocella halophila

full scientific name: Desulfocella halophila Brandt et al. 1999

strain designation: GSL-But2

type strain: yes

Morphology

cell morphology

@ref: 119807
gram stain: negative
motility: no

colony morphology

@ref: 4476
incubation period: 3-7 days

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
4476	DESULFOCELLA HALOPHILA MEDIUM (DSMZ Medium 815a)	yes	https://mediadive.dsmz.de/medium/815a	Name: DESULFOCELLA HALOPHILA MEDIUM (DSMZ Medium 815a) Composition: NaCl 40.0 g/l MgCl2 x 6 H2O 8.0 g/l CaCl2 x 2 H2O 6.0 g/l Na2SO4 3.0 g/l MOPS 3.0 g/l Na-pyruvate 2.5 g/l KCl 2.0 g/l Yeast extract 1.0 g/l Na2CO3 0.5 g/l NH4Cl 0.3 g/l KH2PO4 0.2 g/l Na2S x 9 H2O 0.1 g/l SrCl2 x 6 H2O 0.1 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
39470	MEDIUM 399 - for Desulfocella halophila	yes		Distilled water make up to (950.000 ml);Sodium chloride (40.000 g);Potassium chloride (2.000 g);Magnesium chloride hexahydrate (8.000 g);Calcium chloride dihydrate(6.000 g);Sodium sulphate (3.000 g);Yeast extract (1.000 g);Potassium di-hydrogen phosphate
119807	CIP Medium 399	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=399

culture temp

@ref	growth	type	temperature	range
4476	positive	growth	30	mesophilic
39470	positive	growth	30	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 4476
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	isolation date
4476	surface sediment	Great Salt Lake	USA	USA	North America
119807	Environment, Anaerobic mud	Great salt lake, Utah	United States of America	USA	North America	1995

isolation source categories

Cat1: #Environmental
Cat2: #Terrestrial
Cat3: #Sediment

taxonmaps

@ref: 69479
File name: preview.99_38090.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16166;96_4523;97_22223;98_27956;99_38090&stattab=map
Last taxonomy: Desulfocella halophila subclade
16S sequence: AF022936
Sequence Identity:
Total samples: 122
soil counts: 17
aquatic counts: 86
animal counts: 19

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
4476	1	Risk group (German classification)
119807	1	Risk group (French classification)

Sequence information

16S sequences

@ref: 4476
description: Desulfocella halophila 16S ribosomal RNA gene, partial sequence
accession: AF022936
length: 1547
database: ena
NCBI tax ID: 66835

GC content

@ref: 4476
GC-content: 35
method: high performance liquid chromatography (HPLC)

External links

@ref: 4476

culture collection no.: DSM 11763, ATCC 700426, CIP 106097

straininfo link

@ref: 73486
straininfo: 49171

literature

topic: Phylogeny
Pubmed-ID: 10028263
title: Desulfocella halophila gen. nov., sp. nov., a halophilic, fatty-acid-oxidizing, sulfate-reducing bacterium isolated from sediments of the Great Salt Lake.
authors: Brandt KK, Patel BK, Ingvorsen K
journal: Int J Syst Bacteriol
DOI: 10.1099/00207713-49-1-193
year: 1999
mesh: Bacteria/*classification/metabolism, Base Sequence, Fatty Acids/*metabolism, *Geologic Sediments, Molecular Sequence Data, Sulfates/*metabolism, *Water Microbiology
topic2: Metabolism

Reference

@id	authors	catalogue	doi/url	title
4476	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11763)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-11763
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39470	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/18189
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
73486	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49171.1	StrainInfo: A central database for resolving microbial strain identifiers
119807	Curators of the CIP	Collection of Institut Pasteur (CIP 106097)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106097