Strain identifier
BacDive ID: 3969
Type strain: 
Species: Desulfatiglans anilini
Strain history: <- S. Schnell, Ani1
NCBI tax ID(s): 1121399 (strain), 90728 (species)
version 8.1 (current version)
General
@ref: 1671
BacDive-ID: 3969
DSM-Number: 4660
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Desulfatiglans anilini DSM 4660 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121399 | strain |
| 90728 | species |
strain history
- @ref: 1671
- history: <- S. Schnell, Ani1
doi: 10.13145/bacdive3969.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobacteraceae
- genus: Desulfatiglans
- species: Desulfatiglans anilini
- full scientific name: Desulfatiglans anilini (Schnell et al. 1990) Suzuki et al. 2014
synonyms
- @ref: 20215
- synonym: Desulfobacterium anilini
@ref: 1671
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobacteraceae
genus: Desulfatiglans
species: Desulfatiglans anilini
full scientific name: Desulfatiglans anilini (Schnell et al. 1990) Suzuki et al. 2014
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
colony morphology
- @ref: 1671
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 1671
- name: DESULFOBACTER MEDIUM (DSMZ Medium 193)
- growth: yes
- link: https://mediadive.dsmz.de/medium/193
- composition: Name: DESULFOBACTER MEDIUM (DSMZ Medium 193; with strain-specific modifications) Composition: NaCl 6.97906 g/l Na2SO4 2.99102 g/l Na2CO3 1.49551 g/l MgCl2 x 6 H2O 1.29611 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l Phenol 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 1671
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1671 | anaerobe | |
| 69480 | anaerobe | 99.999 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 93 |
| 69480 | no | 99.825 |
Isolation, sampling and environmental information
isolation
- @ref: 1671
- sample type: marine sediment
- geographic location: North Sea coast
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
Safety information
risk assessment
- @ref: 1671
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1671
- description: Desulfobacterium anilini 16S rRNA gene, partial, strain DSM 4660
- accession: AJ237601
- length: 1527
- database: ena
- NCBI tax ID: 1121399
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfatiglans anilini DSM 4660 | GCA_000422285 | scaffold | ncbi | 1121399 |
| 66792 | Desulfobacterium anilini DSM 4660 | 1121399.3 | wgs | patric | 1121399 |
| 66792 | Desulfatiglans anilini DSM 4660 | 2526164742 | draft | img | 1121399 |
GC content
- @ref: 1671
- GC-content: 59.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 93 | no |
| motile | no | 72.099 | no |
| flagellated | no | 97.388 | no |
| gram-positive | no | 99.423 | no |
| anaerobic | yes | 98.969 | yes |
| aerobic | no | 97.008 | yes |
| halophile | no | 57.587 | no |
| spore-forming | no | 92.434 | no |
| thermophile | no | 92.949 | yes |
| glucose-util | no | 52.078 | no |
| glucose-ferment | no | 85.662 | no |
External links
@ref: 1671
culture collection no.: DSM 4660, ATCC 49792, Ani 1
straininfo link
- @ref: 73477
- straininfo: 42690
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 2589921 | Anaerobic degradation of aniline and dihydroxybenzenes by newly isolated sulfate-reducing bacteria and description of Desulfobacterium anilini. | Schnell S, Bak F, Pfennig N | Arch Microbiol | 10.1007/BF00425486 | 1989 | Aniline Compounds/*metabolism, Biodegradation, Environmental, Catechols/metabolism, Colony Count, Microbial, Gram-Negative Bacteria/growth & development/isolation & purification/*metabolism, Hydroquinones/metabolism, Oxidation-Reduction, Phenols/*metabolism, Resorcinols/metabolism, Seawater, *Soil Microbiology | Enzymology |
| Metabolism | 19411421 | Degradation of phenol via phenylphosphate and carboxylation to 4-hydroxybenzoate by a newly isolated strain of the sulfate-reducing bacterium Desulfobacterium anilini. | Ahn YB, Chae JC, Zylstra GJ, Haggblom MM | Appl Environ Microbiol | 10.1128/AEM.00203-09 | 2009 | Acetates/metabolism, Anaerobiosis, Bacterial Proteins/biosynthesis/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deltaproteobacteria/*metabolism, Gene Expression Profiling, Molecular Sequence Data, Organophosphates/*metabolism, Oxidation-Reduction, Parabens/*metabolism, Phenol/*metabolism, Phylogeny, Pyruvic Acid/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfates/metabolism | Phylogeny |
| Phylogeny | 24944334 | Reclassification of Desulfobacterium anilini as Desulfatiglans anilini comb. nov. within Desulfatiglans gen. nov., and description of a 4-chlorophenol-degrading sulfate-reducing bacterium, Desulfatiglans parachlorophenolica sp. nov. | Suzuki D, Li Z, Cui X, Zhang C, Katayama A | Int J Syst Evol Microbiol | 10.1099/ijs.0.064360-0 | 2014 | Bacterial Typing Techniques, Base Composition, Chlorophenols/*metabolism, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Water Pollutants, Chemical/metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 1671 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4660) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4660 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73477 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42690.1 | StrainInfo: A central database for resolving microbial strain identifiers |