General

@ref: 1369

BacDive-ID: 3967

DSM-Number: 3383

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfobacterium indolicum InO4 is an anaerobe, mesophilic bacterium that was isolated from marine mud.

NCBI tax id

• NCBI tax id: 90733
• Matching level: species

strain history

• @ref: 1369
• history: <- F. Widdel, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; InO4 <- F. Bak {1984}

doi: 10.13145/bacdive3967.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Deltaproteobacteria
• order: Desulfobacterales
• family: Desulfobacteraceae
• genus: Desulfobacterium
• species: Desulfobacterium indolicum
• full scientific name: Desulfobacterium indolicum Bak and Widdel 1988

@ref: 1369

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfobacterium

species: Desulfobacterium indolicum

full scientific name: Desulfobacterium indolicum Bak and Widdel 1988

strain designation: InO4

type strain: yes

Culture and growth conditions

culture medium

• @ref: 1369
• name: DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)
• growth: yes
• link: https://mediadive.dsmz.de/medium/383
• composition: Name: DESULFOBACTERIUM MEDIUM (DSMZ Medium 383; with strain-specific modifications) Composition: Na2SO4 2.99102 g/l NaCl 1.88435 g/l Na2CO3 0.997009 g/l KCl 0.498505 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299102 g/l Indole 0.269192 g/l MgCl2 x 6 H2O 0.251246 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000469591 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

• @ref: 1369
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 1369
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 1369
• sample type: marine mud
• geographic location: Venice
• country: Italy
• origin.country: ITA
• continent: Europe

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_96167.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_127;96_39350;97_50125;98_65951;99_96167&stattab=map
• Last taxonomy: Desulfobacterium indolicum subclade
• 16S sequence: AJ237607
• Sequence Identity:
• Total samples: 708
• soil counts: 69
• aquatic counts: 623
• animal counts: 3
• plant counts: 13

Safety information

risk assessment

• @ref: 1369
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 1369
• description: Desulfobacterium indolicum 16S rRNA gene, partial, strain DSM 3383
• accession: AJ237607
• length: 1519
• database: ena
• NCBI tax ID: 90733

GC content

• @ref: 1369
• GC-content: 47.4

External links

@ref: 1369

culture collection no.: DSM 3383, ATCC 43938

straininfo link

• @ref: 73475
• straininfo: 46075

Reference