Strain identifier

BacDive ID: 3966

Type strain: Yes

Species: Desulfocastanea catecholica

Strain Designation: NZva20

Strain history: DSM 3882 <-- R. Szewzyk; Univ. of Konstanz, Germany; NZva20.

NCBI tax ID(s): 90729 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1500

BacDive-ID: 3966

DSM-Number: 3882

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfocastanea catecholica NZva20 is an anaerobe, mesophilic bacterium that was isolated from anoxic mud.

NCBI tax id

  • NCBI tax id: 90729
  • Matching level: species

strain history

@refhistory
1500<- R. Szewzyk, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; NZva20 <- R. Szewzyk {1985}
67770DSM 3882 <-- R. Szewzyk; Univ. of Konstanz, Germany; NZva20.

doi: 10.13145/bacdive3966.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobulbaceae
  • genus: Desulfocastanea
  • species: Desulfocastanea catecholica
  • full scientific name: Desulfocastanea catecholica (Szewzyk and Pfennig 1988) Galushko and Kuever 2021
  • synonyms

    • @ref: 20215
    • synonym: Desulfobacterium catecholicum

@ref: 1500

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobulbaceae

genus: Desulfocastanea

species: Desulfocastanea catecholica

full scientific name: Desulfocastanea catecholica (Szewzyk and Pfennig 1988) Galushko and Kuever 2021

strain designation: NZva20

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1500
  • name: DESULFOBACTERIUM CATECHOLICUM MEDIUM (DSMZ Medium 385)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/385
  • composition: Name: DESULFOCASTAENA MEDIUM (DSMZ Medium 385) Composition: NaCl 6.97906 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 1.29612 g/l Na2CO3 0.997009 g/l KCl 0.498504 g/l Na-benzoate 0.398804 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l Pyrocatechol 0.0598205 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l HCl Distilled water

culture temp

@refgrowthtypetemperaturerange
1500positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1500
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1500anoxic mudDelaware BayNew ZealandNZLAustralia and Oceania
67770Delaware Baynorth-east of NelsonNew ZealandNZLAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_16247.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_143;96_6033;97_9965;98_12252;99_16247&stattab=map
  • Last taxonomy: [Desulfobacterium] catecholicum subclade
  • 16S sequence: AJ237602
  • Sequence Identity:
  • Total samples: 51
  • soil counts: 4
  • aquatic counts: 46
  • animal counts: 1

Safety information

risk assessment

  • @ref: 1500
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1500
  • description: Desulfobacterium catecholicum 16S rRNA gene, partial, strain DSM 3882
  • accession: AJ237602
  • length: 1501
  • database: ena
  • NCBI tax ID: 90729

GC content

@refGC-contentmethod
150052.4
6777052.4thermal denaturation, midpoint method (Tm)

External links

@ref: 1500

culture collection no.: DSM 3882, JCM 39068

straininfo link

  • @ref: 73474
  • straininfo: 47771

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17329777Desulfopila aestuarii gen. nov., sp. nov., a Gram-negative, rod-like, sulfate-reducing bacterium isolated from an estuarine sediment in Japan.Suzuki D, Ueki A, Amaishi A, Ueki KInt J Syst Evol Microbiol10.1099/ijs.0.64600-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Gram-Negative Bacteria/*classification/genetics/metabolism, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sulfates/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/metabolismMetabolism
Phylogeny25278560Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant.Junghare M, Schink BInt J Syst Evol Microbiol10.1099/ijs.0.066761-02014Base Composition, Benzoates/*metabolism, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Germany, Molecular Sequence Data, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sulfates/*metabolism, Vitamin K 2/chemistryMetabolism

Reference

@idauthorscataloguedoi/urltitle
1500Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3882)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3882
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73474Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47771.1StrainInfo: A central database for resolving microbial strain identifiers