Strain identifier
BacDive ID: 3966
Type strain:
Species: Desulfocastanea catecholica
Strain Designation: NZva20
Strain history: DSM 3882 <-- R. Szewzyk; Univ. of Konstanz, Germany; NZva20.
NCBI tax ID(s): 90729 (species)
General
@ref: 1500
BacDive-ID: 3966
DSM-Number: 3882
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfocastanea catecholica NZva20 is an anaerobe, mesophilic bacterium that was isolated from anoxic mud.
NCBI tax id
- NCBI tax id: 90729
- Matching level: species
strain history
@ref | history |
---|---|
1500 | <- R. Szewzyk, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; NZva20 <- R. Szewzyk {1985} |
67770 | DSM 3882 <-- R. Szewzyk; Univ. of Konstanz, Germany; NZva20. |
doi: 10.13145/bacdive3966.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfobacterales
- family: Desulfobulbaceae
- genus: Desulfocastanea
- species: Desulfocastanea catecholica
- full scientific name: Desulfocastanea catecholica (Szewzyk and Pfennig 1988) Galushko and Kuever 2021
synonyms
- @ref: 20215
- synonym: Desulfobacterium catecholicum
@ref: 1500
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfobacterales
family: Desulfobulbaceae
genus: Desulfocastanea
species: Desulfocastanea catecholica
full scientific name: Desulfocastanea catecholica (Szewzyk and Pfennig 1988) Galushko and Kuever 2021
strain designation: NZva20
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1500
- name: DESULFOBACTERIUM CATECHOLICUM MEDIUM (DSMZ Medium 385)
- growth: yes
- link: https://mediadive.dsmz.de/medium/385
- composition: Name: DESULFOCASTAENA MEDIUM (DSMZ Medium 385) Composition: NaCl 6.97906 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 1.29612 g/l Na2CO3 0.997009 g/l KCl 0.498504 g/l Na-benzoate 0.398804 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l Pyrocatechol 0.0598205 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l HCl Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1500 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1500
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
1500 | anoxic mud | Delaware Bay | New Zealand | NZL | Australia and Oceania |
67770 | Delaware Bay | north-east of Nelson | New Zealand | NZL | Australia and Oceania |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Mud (Sludge) |
#Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_16247.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_143;96_6033;97_9965;98_12252;99_16247&stattab=map
- Last taxonomy: [Desulfobacterium] catecholicum subclade
- 16S sequence: AJ237602
- Sequence Identity:
- Total samples: 51
- soil counts: 4
- aquatic counts: 46
- animal counts: 1
Safety information
risk assessment
- @ref: 1500
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1500
- description: Desulfobacterium catecholicum 16S rRNA gene, partial, strain DSM 3882
- accession: AJ237602
- length: 1501
- database: ena
- NCBI tax ID: 90729
GC content
@ref | GC-content | method |
---|---|---|
1500 | 52.4 | |
67770 | 52.4 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 1500
culture collection no.: DSM 3882, JCM 39068
straininfo link
- @ref: 73474
- straininfo: 47771
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17329777 | Desulfopila aestuarii gen. nov., sp. nov., a Gram-negative, rod-like, sulfate-reducing bacterium isolated from an estuarine sediment in Japan. | Suzuki D, Ueki A, Amaishi A, Ueki K | Int J Syst Evol Microbiol | 10.1099/ijs.0.64600-0 | 2007 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Gram-Negative Bacteria/*classification/genetics/metabolism, Japan, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sulfates/metabolism, Sulfur-Reducing Bacteria/*classification/genetics/metabolism | Metabolism |
Phylogeny | 25278560 | Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant. | Junghare M, Schink B | Int J Syst Evol Microbiol | 10.1099/ijs.0.066761-0 | 2014 | Base Composition, Benzoates/*metabolism, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Germany, Molecular Sequence Data, Oxidation-Reduction, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sulfates/*metabolism, Vitamin K 2/chemistry | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1500 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3882) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3882 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
73474 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47771.1 | StrainInfo: A central database for resolving microbial strain identifiers |