Strain identifier

BacDive ID: 3954

Type strain: Yes

Species: Desulfobacter curvatus

Strain Designation: AcRM3

Strain history: <- F. Widdel, AcRM3

NCBI tax ID(s): 1121396 (strain), 2290 (species)

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General

@ref: 1365

BacDive-ID: 3954

DSM-Number: 3379

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Desulfobacter curvatus AcRM3 is an anaerobe, mesophilic, motile bacterium that was isolated from marine mud.

NCBI tax id

NCBI tax idMatching level
1121396strain
2290species

strain history

  • @ref: 1365
  • history: <- F. Widdel, AcRM3

doi: 10.13145/bacdive3954.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfobacter
  • species: Desulfobacter curvatus
  • full scientific name: Desulfobacter curvatus Widdel 1988

@ref: 1365

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfobacter

species: Desulfobacter curvatus

full scientific name: Desulfobacter curvatus Widdel 1988

strain designation: AcRM3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.167
6948099.999negative

Culture and growth conditions

culture medium

  • @ref: 1365
  • name: DESULFOBACTER MEDIUM (DSMZ Medium 195)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/195
  • composition: Name: DESULFOBACTER MEDIUM (DSMZ Medium 195) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-acetate x 3 H2O 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 1365
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1365anaerobe
69480anaerobe99.734

spore formation

@refspore formationconfidence
69481no100
69480no99.915

Isolation, sampling and environmental information

isolation

  • @ref: 1365
  • sample type: marine mud
  • geographic location: Venice
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 1365
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218D.curvatus 16S ribosomal rRNAM344131396ena2290
1365Desulfobacter curvatus DSM 3379 16S ribosomal RNA gene, partial sequenceAF4181751523ena2290

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfobacter curvatus DSM 3379GCA_000373985scaffoldncbi1121396
66792Desulfobacter curvatus DSM 33791121396.3wgspatric1121396
66792Desulfobacter curvatus DSM 33792515154174draftimg1121396

GC content

  • @ref: 1365
  • GC-content: 46.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes86.467no
flagellatedno58.372no
gram-positiveno98.73no
anaerobicyes98.753yes
aerobicno96.159no
halophileno77.785no
spore-formingno83.985no
glucose-utilyes58.808no
thermophileno97.505yes
glucose-fermentno82.871no

External links

@ref: 1365

culture collection no.: DSM 3379, ATCC 43919

straininfo link

  • @ref: 73463
  • straininfo: 42125

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1365Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3379)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3379
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73463Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42125.1StrainInfo: A central database for resolving microbial strain identifiers