Archive BacDiveID:10.13145/bacdive3943.20230509.8.1

Strain identifier

BacDive ID: 3943

Type strain:

Species: Mobilicoccus pelagius

Strain Designation: Aji5-31

Strain history: <- T. Tamura, Natl. Inst. of Technol. and Evaluation (NITE), Japan; NBRC 104925 <- Lino and Iwami; Aji5-31

NCBI tax ID(s): 1089455 (strain), 746032 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 16502

BacDive-ID: 3943

DSM-Number: 22762

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Mobilicoccus pelagius Aji5-31 is a mesophilic, Gram-positive bacterium that was isolated from fish gut, Japanese horse mackerel Trachurus japonicus.

NCBI tax id

NCBI tax id	Matching level
1089455	strain
746032	species

strain history

@ref: 16502
history: <- T. Tamura, Natl. Inst. of Technol. and Evaluation (NITE), Japan; NBRC 104925 <- Lino and Iwami; Aji5-31

doi: 10.13145/bacdive3943.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Dermatophilaceae
genus: Mobilicoccus
species: Mobilicoccus pelagius
full scientific name: Mobilicoccus pelagius Hamada et al. 2011

@ref: 16502

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermatophilaceae

genus: Mobilicoccus

species: Mobilicoccus pelagius

full scientific name: Mobilicoccus pelagius Hamada et al. 2011

strain designation: Aji5-31

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 99.623

Culture and growth conditions

culture medium

@ref: 16502
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref: 16502
growth: positive
type: growth
temperature: 25
range: mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 99.985

Isolation, sampling and environmental information

isolation

@ref: 16502
sample type: fish gut, Japanese horse mackerel Trachurus japonicus
host species: Trachurus japonicus
geographic location: Chiba prefecture, Awa district, Tokyo Bay, Kyonan Beach
country: Japan
origin.country: JPN
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes
#Host Body-Site	#Gastrointestinal tract	#Stomach

taxonmaps

@ref: 69479
File name: preview.99_5875.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2814;97_3455;98_4368;99_5875&stattab=map
Last taxonomy: Mobilicoccus pelagius
16S sequence: AB550798
Sequence Identity:
Total samples: 262
soil counts: 7
aquatic counts: 25
animal counts: 225
plant counts: 5

Safety information

risk assessment

@ref: 16502
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 16502
description: Mobilicoccus pelagius gene for 16S rRNA, partial sequence
accession: AB550798
length: 1474
database: ena
NCBI tax ID: 1089455

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Mobilicoccus pelagius NBRC 104925	GCA_000247995	contig	ncbi	1089455
66792	Mobilicoccus pelagius NBRC 104925	1089455.3	wgs	patric	1089455
66792	Mobilicoccus pelagius NBRC 104925	2513237258	draft	img	1089455

GC content

@ref: 16502
GC-content: 71.6
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	73	no
motile	yes	51.605	no
flagellated	no	89.231	no
gram-positive	yes	86.914	no
anaerobic	no	96.154	no
aerobic	yes	77.136	no
halophile	no	90.395	no
spore-forming	no	84.976	no
glucose-util	yes	89.2	no
glucose-ferment	no	78.154	no
thermophile	no	94.687	no

External links

@ref: 16502

culture collection no.: DSM 22762, NBRC 104925

straininfo link

@ref: 73452
straininfo: 407786

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	21282898	Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (Masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov.	Hamada M, Iino T, Iwami T, Harayama S, Tamura T, Suzuki K	J Gen Appl Microbiol	10.2323/jgam.56.427	2010	Actinomycetales/classification/genetics/isolation & purification/physiology, Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Fishes/microbiology, Intestines/microbiology, Japan, Microscopy, Electron, Molecular Sequence Data, Peptidoglycan/analysis, Phenotype, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Vitamin K 2/analysis	Genetics
Phylogeny	34436297	Isolation, Phylogenetic and Gephyromycin Metabolites Characterization of New Exopolysaccharides-Bearing Antarctic Actinobacterium from Feces of Emperor Penguin.	Gao HM, Xie PF, Zhang XL, Yang Q	Mar Drugs	10.3390/md19080458	2021	Actinobacteria/genetics, Animals, Antarctic Regions, Anthraquinones/metabolism, Aquatic Organisms, Bacterial Typing Techniques, Bridged-Ring Compounds/metabolism, Feces/microbiology, Humans, Phylogeny, Phytotherapy, RNA, Ribosomal, 16S/genetics, Spheniscidae	Metabolism
Phylogeny	34617879	Agilicoccus flavus gen. nov., sp. nov., a novel member of the family Dermatophilaceae isolated from the Pearl River.	Yin LZ, Liu ZT, Li JL, Wang PD, Dong L, Duan L, Luo XQ, Fang BZ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005076	2021	Actinobacteria/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
16502	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22762)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-22762
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
73452	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID407786.1	StrainInfo: A central database for resolving microbial strain identifiers