Strain identifier
BacDive ID: 3930
Type strain: 
Species: Kytococcus aerolatus
Strain Designation: 02-St-019/1, 02-St-19/1
Strain history: CCM 7639 <-- P. Kämpfer 02-St-019/1.
NCBI tax ID(s): 592308 (species)
version 8.1 (current version)
General
@ref: 16196
BacDive-ID: 3930
DSM-Number: 22179
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Kytococcus aerolatus 02-St-019/1 is an aerobe, mesophilic bacterium that was isolated from indoor air sample from a room colonized with moulds.
NCBI tax id
- NCBI tax id: 592308
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16196 | <- P. Kämpfer, Univ. Giessen, Germany; 02-St-019/1 <- J. Schäfer |
| 67770 | CCM 7639 <-- P. Kämpfer 02-St-019/1. |
doi: 10.13145/bacdive3930.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Kytococcaceae
- genus: Kytococcus
- species: Kytococcus aerolatus
- full scientific name: Kytococcus aerolatus Kämpfer et al. 2009
@ref: 16196
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Kytococcaceae
genus: Kytococcus
species: Kytococcus aerolatus
full scientific name: Kytococcus aerolatus Kämpfer et al. 2009 emend. Nouioui et al. 2018
strain designation: 02-St-019/1, 02-St-19/1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.094 | |
| 69480 | 100 | positive |
colony morphology
- @ref: 61371
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 16196
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16196 | positive | growth | 28 | mesophilic |
| 61371 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61371
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
murein
- @ref: 16196
- murein short key: A11.43
- type: A4alpha L-Lys-D-Glu2
observation
- @ref: 67770
- observation: quinones: MK-7, MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 16196 | indoor air sample from a room colonized with moulds | Germany | DEU | Europe |
| 61371 | Wall material,air sampling | Germany | DEU | Europe |
| 67770 | Indoor air sample |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | #House |
| #Environmental | #Air | #Indoor Air |
| #Host | #Fungi |
Safety information
risk assessment
- @ref: 16196
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16196
- description: Kytococcus aerolatus partial 16S rRNA gene, type strain 02-St-019/1T
- accession: FM992368
- length: 1348
- database: ena
- NCBI tax ID: 592308
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kytococcus aerolatus strain DSM 22179 | 592308.3 | wgs | patric | 592308 |
| 66792 | Kytococcus aerolatus DSM 22179 | 2734482797 | draft | img | 592308 |
| 67770 | Kytococcus aerolatus DSM 22179 | GCA_900187395 | contig | ncbi | 592308 |
GC content
- @ref: 67770
- GC-content: 72.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | yes | 92.717 | no |
| anaerobic | no | 98.938 | no |
| halophile | no | 52.831 | no |
| spore-forming | no | 92.888 | no |
| glucose-util | yes | 85.112 | no |
| thermophile | no | 95.456 | yes |
| flagellated | no | 97.895 | no |
| aerobic | yes | 86.497 | yes |
| motile | no | 93.873 | no |
| glucose-ferment | no | 86.85 | no |
External links
@ref: 16196
culture collection no.: DSM 22179, CCM 7639, CCUG 57578, JCM 17971
straininfo link
- @ref: 73440
- straininfo: 398205
literature
- topic: Phylogeny
- Pubmed-ID: 19541443
- title: Kytococcus aerolatus sp. nov., isolated from indoor air in a room colonized with moulds.
- authors: Kampfer P, Martin K, Schafer J, Schumann P
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2009.05.004
- year: 2009
- mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, *Air Microbiology, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Lysine/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Pigments, Biological/biosynthesis, RNA, Ribosomal, 16S/genetics, Ribose/analysis, Sequence Analysis, DNA, Vitamin K 2/analysis, Xylose/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16196 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22179) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22179 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 61371 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 57578) | https://www.ccug.se/strain?id=57578 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 73440 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398205.1 | StrainInfo: A central database for resolving microbial strain identifiers |