Strain identifier
BacDive ID: 3924
Type strain:
Species: Dermacoccus abyssi
Strain Designation: MT1.1
Strain history: CIP <- 2006, DSMZ <- W. Pathom-aree, Newcastle Univ., Newcastle upon Tyne, UK: strain MT1.1
NCBI tax ID(s): 322596 (species)
General
@ref: 7061
BacDive-ID: 3924
DSM-Number: 17573
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Dermacoccus abyssi MT1.1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 322596
- Matching level: species
strain history
@ref | history |
---|---|
7061 | <- W. Pathom-aree; MT1.1 |
67770 | NCIMB 14084 <-- W. Pathom-aree MT1.1. |
115985 | CIP <- 2006, DSMZ <- W. Pathom-aree, Newcastle Univ., Newcastle upon Tyne, UK: strain MT1.1 |
doi: 10.13145/bacdive3924.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermacoccaceae
- genus: Dermacoccus
- species: Dermacoccus abyssi
- full scientific name: Dermacoccus abyssi Pathom-aree et al. 2006
@ref: 7061
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermacoccaceae
genus: Dermacoccus
species: Dermacoccus abyssi
full scientific name: Dermacoccus abyssi Pathom-aree et al. 2006
strain designation: MT1.1
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell width | cell shape | motility |
---|---|---|---|---|
31729 | positive | 0.8-1.5 µm | rod-shaped | no |
115985 | positive | coccus-shaped | no |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19750 | Brown beige (1011) | 10-14 days | ISP 2 |
19750 | 10-14 days | ISP 3 | |
19750 | Olive yellow (1020) | 10-14 days | ISP 4 |
19750 | Brown beige (1011) | 10-14 days | ISP 5 |
19750 | Brown beige (1011) | 10-14 days | ISP 6 |
19750 | Pearl orange (2013) | 10-14 days | ISP 7 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
19750 | no | ISP 2 |
19750 | no | ISP 3 |
19750 | no | ISP 4 |
19750 | no | ISP 5 |
19750 | no | ISP 6 |
19750 | no | ISP 7 |
pigmentation
- @ref: 31729
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7061 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
19750 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19750 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19750 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19750 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
19750 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19750 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
37506 | MEDIUM 338 - for Sanguibacter keddieii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (3.000 g);Trypto casein soy agar (30.000 g) | |
40035 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
115985 | CIP Medium 338 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19750 | positive | optimum | 28 | mesophilic |
7061 | positive | growth | 28 | mesophilic |
31729 | positive | growth | 10-37 | |
31729 | positive | optimum | 28 | mesophilic |
37506 | positive | growth | 30 | mesophilic |
40035 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31729 | positive | growth | 7 |
31729 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31729 | aerobe |
115985 | obligate aerobe |
spore formation
- @ref: 31729
- spore formation: yes
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31729 | NaCl | positive | growth | 7.5-10 % |
31729 | NaCl | positive | optimum | 7.5 % |
observation
@ref | observation |
---|---|
31729 | aggregates in chains |
67770 | quinones: MK-8(H2) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31729 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17057 | cellobiose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | - | builds acid from |
68371 | 15824 | D-fructose | - | builds acid from |
68371 | 17634 | D-glucose | - | builds acid from |
68371 | 12936 | D-galactose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
115985 | 17632 | nitrate | + | reduction |
115985 | 16301 | nitrite | - | reduction |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
- @ref: 115985
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
115985 | oxidase | - | |
115985 | catalase | + | 1.11.1.6 |
115985 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19750 | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19750 | + | + | + | + | + | - | - | - | - | + | + | - | - | - | + | + | - | - | - | |
115985 | - | + | + | + | + | - | - | + | - | + | + | - | - | - | + | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
115985 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country |
---|---|---|---|
7061 | marine sediment | Mariana Trench | |
67770 | Sediment from the Challenger Deep of the Mariana Trench | ||
115985 | Environment, Marine sediment | Northwest Pacific | Pacific Ocean |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_3622.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_403;97_455;98_524;99_3622&stattab=map
- Last taxonomy: Dermacoccus
- 16S sequence: AY894323
- Sequence Identity:
- Total samples: 3867
- soil counts: 94
- aquatic counts: 315
- animal counts: 3401
- plant counts: 57
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7061 | 1 | Risk group (German classification) |
19750 | 1 | Risk group (German classification) |
115985 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 7061
- description: Dermacoccus abyssi strain MT1.1 16S ribosomal RNA gene, partial sequence
- accession: AY894323
- length: 1469
- database: ena
- NCBI tax ID: 322596
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Dermacoccus abyssi MT1.1 | 2833109367 | draft | img | 322596 |
67770 | Dermacoccus abyssi MT1.1 | GCA_003515945 | contig | ncbi | 322596 |
GC content
@ref | GC-content | method |
---|---|---|
7061 | 65.2 | |
67770 | 65.2 | high performance liquid chromatography (HPLC) |
External links
@ref: 7061
culture collection no.: DSM 17573, CIP 109302, NCIMB 14084, JCM 14339
straininfo link
- @ref: 73433
- straininfo: 297165
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 16738097 | Dermacoccus abyssi sp. nov., a piezotolerant actinomycete isolated from the Mariana Trench. | Pathom-Aree W, Nogi Y, Sutcliffe IC, Ward AC, Horikoshi K, Bull AT, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.64133-0 | 2006 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Geologic Sediments/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Genetics |
Phylogeny | 17012551 | Dermacoccus barathri sp. nov. and Dermacoccus profundi sp. nov., novel actinomycetes isolated from deep-sea mud of the Mariana Trench. | Pathom-Aree W, Nogi Y, Ward AC, Horikoshi K, Bull AT, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.64250-0 | 2006 | Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phenotype, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA | Genetics |
Metabolism | 20448892 | Dermacozines, a new phenazine family from deep-sea dermacocci isolated from a Mariana Trench sediment. | Abdel-Mageed WM, Milne BF, Wagner M, Schumacher M, Sandor P, Pathom-aree W, Goodfellow M, Bull AT, Horikoshi K, Ebel R, Diederich M, Fiedler HP, Jaspars M | Org Biomol Chem | 10.1039/c001445a | 2010 | Actinomycetales/*chemistry/metabolism, Antineoplastic Agents/chemistry/isolation & purification/metabolism/pharmacology, Free Radical Scavengers/chemistry/isolation & purification/metabolism/pharmacology, Geologic Sediments/*chemistry, Humans, Inhibitory Concentration 50, K562 Cells, Magnetic Resonance Spectroscopy, Models, Molecular, Molecular Conformation, Pacific Ocean, Phenazines/*chemistry/isolation & purification/metabolism/*pharmacology, Pigmentation | Enzymology |
Metabolism | 24309230 | Biodecolorization of a food azo dye by the deep sea Dermacoccus abyssi MT1.1(T) strain from the Mariana Trench. | Lang W, Sirisansaneeyakul S, Martins LO, Ngiwsara L, Sakairi N, Pathom-aree W, Okuyama M, Mori H, Kimura A | J Environ Manage | 10.1016/j.jenvman.2013.11.002 | 2013 | Actinomycetales/*metabolism, Azo Compounds/*metabolism, Coloring Agents/*metabolism, Kinetics, NADH, NADPH Oxidoreductases/metabolism, Nitroreductases, Pacific Ocean, Water Pollutants, Chemical/*metabolism, Water Pollution, Chemical/*prevention & control | Enzymology |
Phylogeny | 24499261 | Dermacozines H-J isolated from a deep-sea strain of Dermacoccus abyssi from Mariana Trench sediments. | Wagner M, Abdel-Mageed WM, Ebel R, Bull AT, Goodfellow M, Fiedler HP, Jaspars M | J Nat Prod | 10.1021/np400952d | 2014 | Actinomycetales/*chemistry, Biphenyl Compounds/pharmacology, DNA, Bacterial/genetics, Free Radical Scavengers/chemistry/*isolation & purification/pharmacology, Geologic Sediments/chemistry, Inhibitory Concentration 50, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Oxidation-Reduction, Phenazines/chemistry/*isolation & purification/pharmacology, Phylogeny, Picrates/pharmacology | Enzymology |
Phylogeny | 32106586 | Whole Genome Sequence of Dermacoccus abyssi MT1.1 Isolated from the Challenger Deep of the Mariana Trench Reveals Phenazine Biosynthesis Locus and Environmental Adaptation Factors. | Abdel-Mageed WM, Juhasz B, Lehri B, Alqahtani AS, Nouioui I, Pech-Puch D, Tabudravu JN, Goodfellow M, Rodriguez J, Jaspars M, Karlyshev AV | Mar Drugs | 10.3390/md18030131 | 2020 | Acclimatization, Actinobacteria/*genetics/isolation & purification/metabolism, Animals, Geologic Sediments/microbiology, Oceans and Seas, Phenazines/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Whole Genome Sequencing | Genetics |
Stress | 35205058 | Plant Beneficial Deep-Sea Actinobacterium, Dermacoccus abyssi MT1.1(T) Promote Growth of Tomato (Solanum lycopersicum) under Salinity Stress. | Rangseekaew P, Barros-Rodriguez A, Pathom-Aree W, Manzanera M | Biology (Basel) | 10.3390/biology11020191 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7061 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17573) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17573 | |||
19750 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM17573.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31729 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28005 | 28776041 | |
37506 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7029 | ||||
40035 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7138 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
73433 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297165.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
115985 | Curators of the CIP | Collection of Institut Pasteur (CIP 109302) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109302 |