Strain identifier
BacDive ID: 3918
Type strain:
Species: Dermabacter hominis
Strain Designation: S69, S-69
Strain history: CIP <- 1997, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland <- NCFB <- D. Jones: strain S-69
NCBI tax ID(s): 1349750 (strain), 36740 (species)
General
@ref: 2893
BacDive-ID: 3918
DSM-Number: 7083
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, human pathogen
description: Dermabacter hominis S69 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from human skin.
NCBI tax id
NCBI tax id | Matching level |
---|---|
36740 | species |
1349750 | strain |
strain history
@ref | history |
---|---|
2893 | <- NCFB <- D. Jones, S69 |
67770 | NCFB 2769 <-- D. Jones and M. D. Collins S69. |
119947 | CIP <- 1997, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland <- NCFB <- D. Jones: strain S-69 |
doi: 10.13145/bacdive3918.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermabacteraceae
- genus: Dermabacter
- species: Dermabacter hominis
- full scientific name: Dermabacter hominis corrig. Jones and Collins 1989
synonyms
- @ref: 20215
- synonym: Dermabacter hominus
@ref: 2893
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermabacteraceae
genus: Dermabacter
species: Dermabacter hominis
full scientific name: Dermabacter hominis Jones and Collins 1989 emend. Nouioui et al. 2018
strain designation: S69, S-69
type strain: yes
Morphology
cell morphology
- @ref: 119947
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19723 | Ivory | 10-14 days | ISP 2 |
19723 | Light ivory | 10-14 days | ISP 3 |
19723 | Light ivory | 10-14 days | ISP 4 |
19723 | Ivory | 10-14 days | ISP 6 |
19723 | Light ivory | 10-14 days | ISP 7 |
119947 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
19723 | no | ISP 2 |
19723 | no | ISP 3 |
19723 | no | ISP 4 |
19723 | no | ISP 6 |
19723 | no | ISP 7 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2893 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
19723 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19723 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19723 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
19723 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
19723 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
34667 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
40521 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
119947 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19723 | positive | optimum | 28 | mesophilic |
2893 | positive | growth | 37 | mesophilic |
34667 | positive | growth | 37 | mesophilic |
40521 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
119947 | positive | growth | 15-41 | |
119947 | no | growth | 10 | psychrophilic |
119947 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119947
- oxygen tolerance: facultative anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
19723 | NaCl | positive | maximum | 10 % |
119947 | NaCl | positive | growth | 0-6 % |
119947 | NaCl | no | growth | 8 % |
119947 | NaCl | no | growth | 10 % |
murein
- @ref: 2893
- murein short key: A31.03
- type: A4gamma m-Dpm-D-Asp-D-Glu; alpha-carboxyl group of D-Glu substituted by glycine
observation
- @ref: 67770
- observation: quinones: MK-9 (MK-8)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19723 | 17234 | glucose | + | |
19723 | 22599 | arabinose | - | |
19723 | 17992 | sucrose | - | |
19723 | 18222 | xylose | - | |
19723 | 17268 | myo-inositol | - | |
19723 | 29864 | mannitol | - | |
19723 | 28757 | fructose | - | |
19723 | 26546 | rhamnose | - | |
19723 | 16634 | raffinose | - | |
19723 | 62968 | cellulose | - | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28017 | starch | + | builds acid from |
68371 | 16634 | raffinose | + | builds acid from |
68371 | 6731 | melezitose | + | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | + | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
119947 | 16947 | citrate | - | carbon source |
119947 | 4853 | esculin | + | hydrolysis |
119947 | 606565 | hippurate | - | hydrolysis |
119947 | 17632 | nitrate | - | reduction |
119947 | 16301 | nitrite | - | reduction |
119947 | 17632 | nitrate | + | respiration |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | + | fermentation |
antibiotic resistance
- @ref: 119947
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
119947 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
119947 | 15688 | acetoin | - | ||
119947 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
119947 | oxidase | - | |
119947 | beta-galactosidase | + | 3.2.1.23 |
119947 | alcohol dehydrogenase | - | 1.1.1.1 |
119947 | gelatinase | +/- | |
119947 | amylase | + | |
119947 | DNase | + | |
119947 | caseinase | - | 3.4.21.50 |
119947 | catalase | + | 1.11.1.6 |
119947 | tween esterase | - | |
119947 | gamma-glutamyltransferase | - | 2.3.2.2 |
119947 | lecithinase | - | |
119947 | lipase | - | |
119947 | lysine decarboxylase | + | 4.1.1.18 |
119947 | ornithine decarboxylase | + | 4.1.1.17 |
119947 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119947 | protease | - | |
119947 | tryptophan deaminase | - | |
119947 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19723 | + | - | + | + | - | - | + | - | - | - | - | + | +/- | - | - | + | - | + | + |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119947 | - | + | + | + | - | + | - | - | - | - | + | - | + | + | - | + | + | + | + | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19723 | - | - | - | - | - | - | - | - | - | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119947 | +/- | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - | +/- | + | + | + | + | +/- | +/- | + | + | + | + | + | + | - | + | + | + | +/- | - | + | + | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119947 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
2893 | human skin |
51307 | Human skin,forearm of healthy adult |
67770 | Forearm of a healthy adult |
119947 | Human, Forearm |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Limb | #Arm |
#Host | #Human | |
#Host Body-Site | #Organ | #Skin, Nail, Hair |
taxonmaps
- @ref: 69479
- File name: preview.99_2911.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_737;97_860;98_1003;99_2911&stattab=map
- Last taxonomy: Dermabacter
- 16S sequence: LC144978
- Sequence Identity:
- Total samples: 37762
- soil counts: 2427
- aquatic counts: 1910
- animal counts: 32727
- plant counts: 698
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
2893 | yes, in single cases | 1 | Risk group (German classification) |
19723 | 1 | Risk group (German classification) | |
119947 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | D.hominis (NCFB 2769) gene for 16S ribosomal RNA | X76728 | 1481 | ena | 36740 |
2893 | D.hominis 16S ribosomal RNA gene | X91034 | 1511 | ena | 36740 |
67770 | Dermabacter hominis gene for 16S ribosomal RNA, partial sequence, strain: JCM 7448 | LC144978 | 1456 | ena | 36740 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Dermabacter hominis NBRC 106157 | 1349750.9 | wgs | patric | 1349750 |
66792 | Dermabacter hominis NBRC 106157 | 2731957604 | draft | img | 1349750 |
67770 | Dermabacter hominis NBRC 106157 | GCA_001570785 | contig | ncbi | 1349750 |
GC content
@ref | GC-content | method |
---|---|---|
2893 | 62.0 | thermal denaturation, midpoint method (Tm) |
67770 | 62 | thermal denaturation, midpoint method (Tm) |
67770 | 63.2 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 91.448 | no |
gram-positive | yes | 92.499 | no |
anaerobic | no | 97.671 | no |
halophile | no | 78.767 | no |
spore-forming | no | 93.709 | no |
glucose-util | yes | 85.565 | yes |
aerobic | no | 64.188 | no |
flagellated | no | 96.791 | no |
thermophile | no | 95.62 | no |
glucose-ferment | yes | 51.704 | no |
External links
@ref: 2893
culture collection no.: DSM 7083, ATCC 49369, NCFB 2769, CCUG 32998, JCM 7448, CCM 4122, CECT 4165, CIP 105144, IFM 10528, IMSNU 21318, NBRC 106157, NCIMB 13131
straininfo link
- @ref: 73427
- straininfo: 42442
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 7989543 | Recognition of Dermabacter hominis, formerly CDC fermentative coryneform group 3 and group 5, as a potential human pathogen. | Gruner E, Steigerwalt AG, Hollis DG, Weyant RS, Weaver RE, Moss CW, Daneshvar M, Brenner DJ | J Clin Microbiol | 10.1128/jcm.32.8.1918-1922.1994 | 1994 | Actinomycetales/*classification/enzymology/*pathogenicity, Actinomycetales Infections/microbiology, Adult, Aged, Bacterial Typing Techniques, Centers for Disease Control and Prevention, U.S., DNA, Bacterial/genetics, Fatty Acids/analysis, Female, Humans, Infant, Infant, Newborn, Male, Middle Aged, Nucleic Acid Hybridization, United States | Pathogenicity |
Phylogeny | 18768630 | Devriesea agamarum gen. nov., sp. nov., a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards. | Martel A, Pasmans F, Hellebuyck T, Haesebrouck F, Vandamme P | Int J Syst Evol Microbiol | 10.1099/ijs.0.65478-0 | 2008 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Animals, Base Composition, Catalase/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Dermatitis/microbiology/*veterinary, Fatty Acids/analysis, Genes, rRNA, Lizards/*microbiology, Locomotion, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sepsis/microbiology/*veterinary, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Vitamin K 2/analysis | Genetics |
Phylogeny | 26867728 | Dermabacter vaginalis sp. nov., isolated from human vaginal fluid. | Chang DH, Rhee MS, Kim BC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000960 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Asians, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Female, Glycolipids/chemistry, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vagina/*microbiology, Vitamin K 2/chemistry | Pathogenicity |
Phylogeny | 27088668 | Dermabacter jinjuensis sp. nov., a novel species of the genus Dermabacter isolated from a clinical specimen. | Park YK, Lee KM, Lee WK, Cho MJ, Lee HS, Cho YG, Lee YC, Lee WK, Seong WK, Hwang KJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001092 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fingers/*microbiology/pathology, Humans, Necrosis, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Suppuration/*microbiology, Vitamin K 2/chemistry | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2893 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7083) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7083 | |||
19723 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM7083.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34667 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17131 | ||||
40521 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14891 | ||||
51307 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 32998) | https://www.ccug.se/strain?id=32998 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
73427 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42442.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119947 | Curators of the CIP | Collection of Institut Pasteur (CIP 105144) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105144 |