Strain identifier

BacDive ID: 390

Type strain: Yes

Species: Candidimonas bauzanensis

Strain Designation: BZ59

Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ59

NCBI tax ID(s): 658167 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16525

BacDive-ID: 390

DSM-Number: 22805

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Candidimonas bauzanensis BZ59 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil from an industrial site contaminated with heavy crude oil and heavy metals.

NCBI tax id

  • NCBI tax id: 658167
  • Matching level: species

strain history

  • @ref: 16525
  • history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ59

doi: 10.13145/bacdive390.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Candidimonas
  • species: Candidimonas bauzanensis
  • full scientific name: Candidimonas bauzanensis Zhang et al. 2012
  • synonyms

    • @ref: 20215
    • synonym: Pollutimonas bauzanensis

@ref: 16525

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Candidimonas

species: Candidimonas bauzanensis

full scientific name: Candidimonas bauzanensis Zhang et al. 2012

strain designation: BZ59

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30451negative1.55 µm0.8 µmrod-shapedyes
69480yes93.831
69480negative99.998

pigmentation

  • @ref: 30451
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16525
  • name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830c
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16525positivegrowth28mesophilic
30451positivegrowth01-37
30451positiveoptimum27.5mesophilic

culture pH

  • @ref: 30451
  • ability: positive
  • type: growth
  • pH: 06-08

Physiology and metabolism

oxygen tolerance

  • @ref: 30451
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.994

halophily

  • @ref: 30451
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3045117128adipate+carbon source
3045122599arabinose+carbon source
3045117234glucose+carbon source
3045125115malate+carbon source

enzymes

@refvalueactivityec
30451acid phosphatase+3.1.3.2
30451catalase+1.11.1.6
30451cytochrome oxidase+1.9.3.1
30451urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 16525
  • sample type: soil from an industrial site contaminated with heavy crude oil and heavy metals
  • geographic location: South Tyrol, Bozen
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Heavy metal
#Engineered#Contamination#Oil (Fuel)
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4626.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_2229;97_2795;98_3472;99_4626&stattab=map
  • Last taxonomy: Candidimonas bauzanensis
  • 16S sequence: GQ246953
  • Sequence Identity:
  • Total samples: 283
  • soil counts: 195
  • aquatic counts: 27
  • animal counts: 56
  • plant counts: 5

Safety information

risk assessment

  • @ref: 16525
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16525
  • description: Candidimonas bauzanensis strain BZ59 16S ribosomal RNA gene, partial sequence
  • accession: GQ246953
  • length: 1525
  • database: ena
  • NCBI tax ID: 658167

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pollutimonas bauzanensis CGMCC 1.10190GCA_900129885scaffoldncbi658167
66792Candidimonas bauzanensis strain CGMCC 1.10190658167.4wgspatric658167
66792Candidimonas bauzanensis CGMCC 1.101902617270875draftimg658167

GC content

@refGC-contentmethod
1652561.6thermal denaturation, midpoint method (Tm)
3045161.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.986yes
flagellatedno75.105no
gram-positiveno98.023yes
anaerobicno98.297yes
aerobicyes69.341yes
halophileno87.009no
spore-formingno92.49no
thermophileno98.989no
glucose-utilno61.819no
glucose-fermentno90.671no

External links

@ref: 16525

culture collection no.: DSM 22805, CGMCC 1.10190, LMG 26046

straininfo link

  • @ref: 70070
  • straininfo: 400617

literature

  • topic: Phylogeny
  • Pubmed-ID: 22039000
  • title: Candidimonas bauzanensis sp. nov., isolated from soil, and emended description of the genus Candidimonas Vaz-Moreira et al. 2011.
  • authors: Zhang DC, Busse HJ, Wieser C, Liu HC, Zhou YG, Schinner F, Margesin R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.036400-0
  • year: 2011
  • mesh: Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Italy, Molecular Sequence Data, Phenotype, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/analysis, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16525Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22805)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22805
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30451Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2678628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70070Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400617.1StrainInfo: A central database for resolving microbial strain identifiers