Strain identifier
BacDive ID: 390
Type strain:
Species: Candidimonas bauzanensis
Strain Designation: BZ59
Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ59
NCBI tax ID(s): 658167 (species)
General
@ref: 16525
BacDive-ID: 390
DSM-Number: 22805
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Candidimonas bauzanensis BZ59 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from soil from an industrial site contaminated with heavy crude oil and heavy metals.
NCBI tax id
- NCBI tax id: 658167
- Matching level: species
strain history
- @ref: 16525
- history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; BZ59
doi: 10.13145/bacdive390.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Candidimonas
- species: Candidimonas bauzanensis
- full scientific name: Candidimonas bauzanensis Zhang et al. 2012
synonyms
- @ref: 20215
- synonym: Pollutimonas bauzanensis
@ref: 16525
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Candidimonas
species: Candidimonas bauzanensis
full scientific name: Candidimonas bauzanensis Zhang et al. 2012
strain designation: BZ59
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30451 | negative | 1.55 µm | 0.8 µm | rod-shaped | yes | |
69480 | yes | 93.831 | ||||
69480 | negative | 99.998 |
pigmentation
- @ref: 30451
- production: yes
Culture and growth conditions
culture medium
- @ref: 16525
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16525 | positive | growth | 28 | mesophilic |
30451 | positive | growth | 01-37 | |
30451 | positive | optimum | 27.5 | mesophilic |
culture pH
- @ref: 30451
- ability: positive
- type: growth
- pH: 06-08
Physiology and metabolism
oxygen tolerance
- @ref: 30451
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.994 |
halophily
- @ref: 30451
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30451 | 17128 | adipate | + | carbon source |
30451 | 22599 | arabinose | + | carbon source |
30451 | 17234 | glucose | + | carbon source |
30451 | 25115 | malate | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30451 | acid phosphatase | + | 3.1.3.2 |
30451 | catalase | + | 1.11.1.6 |
30451 | cytochrome oxidase | + | 1.9.3.1 |
30451 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 16525
- sample type: soil from an industrial site contaminated with heavy crude oil and heavy metals
- geographic location: South Tyrol, Bozen
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Contamination | #Heavy metal |
#Engineered | #Contamination | #Oil (Fuel) |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_4626.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_2229;97_2795;98_3472;99_4626&stattab=map
- Last taxonomy: Candidimonas bauzanensis
- 16S sequence: GQ246953
- Sequence Identity:
- Total samples: 283
- soil counts: 195
- aquatic counts: 27
- animal counts: 56
- plant counts: 5
Safety information
risk assessment
- @ref: 16525
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16525
- description: Candidimonas bauzanensis strain BZ59 16S ribosomal RNA gene, partial sequence
- accession: GQ246953
- length: 1525
- database: ena
- NCBI tax ID: 658167
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Pollutimonas bauzanensis CGMCC 1.10190 | GCA_900129885 | scaffold | ncbi | 658167 |
66792 | Candidimonas bauzanensis strain CGMCC 1.10190 | 658167.4 | wgs | patric | 658167 |
66792 | Candidimonas bauzanensis CGMCC 1.10190 | 2617270875 | draft | img | 658167 |
GC content
@ref | GC-content | method |
---|---|---|
16525 | 61.6 | thermal denaturation, midpoint method (Tm) |
30451 | 61.6 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 87.986 | yes |
flagellated | no | 75.105 | no |
gram-positive | no | 98.023 | yes |
anaerobic | no | 98.297 | yes |
aerobic | yes | 69.341 | yes |
halophile | no | 87.009 | no |
spore-forming | no | 92.49 | no |
thermophile | no | 98.989 | no |
glucose-util | no | 61.819 | no |
glucose-ferment | no | 90.671 | no |
External links
@ref: 16525
culture collection no.: DSM 22805, CGMCC 1.10190, LMG 26046
straininfo link
- @ref: 70070
- straininfo: 400617
literature
- topic: Phylogeny
- Pubmed-ID: 22039000
- title: Candidimonas bauzanensis sp. nov., isolated from soil, and emended description of the genus Candidimonas Vaz-Moreira et al. 2011.
- authors: Zhang DC, Busse HJ, Wieser C, Liu HC, Zhou YG, Schinner F, Margesin R
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036400-0
- year: 2011
- mesh: Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Italy, Molecular Sequence Data, Phenotype, Phospholipids/analysis, *Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/analysis, *Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
16525 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22805) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22805 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
30451 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26786 | 28776041 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
70070 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400617.1 | StrainInfo: A central database for resolving microbial strain identifiers |