Strain identifier

BacDive ID: 3890

Type strain: Yes

Species: Deinococcus roseus

Strain Designation: TDMA-uv51

Strain history: D. Asker et al. TDMA-uv51.

NCBI tax ID(s): 392414 (species)

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@ref: 16189

BacDive-ID: 3890

DSM-Number: 22367

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Deinococcus roseus TDMA-uv51 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from Fresh water.

NCBI tax id

  • NCBI tax id: 392414
  • Matching level: species

strain history

16189<- CCUG; CCUG 53611 <- D. Asker, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; TDMA-uv51
67770D. Asker et al. TDMA-uv51.

doi: 10.13145/bacdive3890.20240510.9

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Deinococcales
  • family: Deinococcaceae
  • genus: Deinococcus
  • species: Deinococcus roseus
  • full scientific name: Deinococcus roseus Asker et al. 2008

@ref: 16189

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus roseus

full scientific name: Deinococcus roseus Asker et al. 2008

strain designation: TDMA-uv51

type strain: yes


cell morphology

  • @ref: 32604
  • gram stain: positive
  • cell length: 1.65 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 59944
  • incubation period: 2-3 days


  • @ref: 32604
  • production: yes

Culture and growth conditions

culture medium

16189R2A MEDIUM (DSMZ Medium 830)yes R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
16189NUTRIENT AGAR (DSMZ Medium 1)yes NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
16189GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)yes Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water

culture temp


culture pH

@refabilitytypepHPH range

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance

spore formation

@refspore formationconfidence


@refsaltgrowthtested relationconcentration
32604NaClpositivegrowth<1 %
32604NaClpositiveoptimum0.25 %


32604aggregates in chains
67770quinones: MK-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3260422599arabinose+carbon source
326045291gelatin+carbon source
3260417234glucose+carbon source
3260417306maltose+carbon source
3260429864mannitol+carbon source
3260437684mannose+carbon source
3260453426tween 80+carbon source


32604cytochrome oxidase+

Isolation, sampling and environmental information


@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16189Fresh waterTottori, Misasa (radioactive site)JapanJPNAsia
59944Fresh waterMisasa (a radioactive site)JapanJPNAsia2005-09-01
67770Freshwater sample collected at MisasaTottori Pref.JapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater


  • @ref: 69479
  • File name: preview.99_12649.png
  • url:;96_3530;97_4335;98_5549;99_12649&stattab=map
  • Last taxonomy: Deinococcus roseus
  • 16S sequence: AB264136
  • Sequence Identity:
  • Total samples: 35
  • soil counts: 12
  • aquatic counts: 14
  • animal counts: 8
  • plant counts: 1

Safety information

risk assessment

  • @ref: 16189
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16189
  • description: Deinococcus roseus gene for 16S rRNA, partial sequence
  • accession: AB264136
  • length: 1402
  • database: nuccore
  • NCBI tax ID: 392414

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Deinococcus roseus JCM 14370GCA_014646895scaffoldncbi392414
66792Deinococcus roseus strain JCM 14370392414.3wgspatric392414

GC content

6777057.1-57.7high performance liquid chromatography (HPLC)

Genome-based predictions



External links

@ref: 16189

culture collection no.: DSM 22367, CCUG 53611, JCM 14370, NBRC 102117

straininfo link

  • @ref: 73400
  • straininfo: 397839


  • topic: Phylogeny
  • Pubmed-ID: 18096345
  • title: Deinococcus misasensis and Deinococcus roseus, novel members of the genus Deinococcus, isolated from a radioactive site in Japan.
  • authors: Asker D, Awad TS, Beppu T, Ueda K
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2007.10.002
  • year: 2007
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deinococcus/*classification/genetics/*isolation & purification/radiation effects, Fatty Acids/analysis, Gamma Rays, Genes, rRNA, Japan, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Ultraviolet Rays, *Water Microbiology
  • topic2: Metabolism


16189Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22367)
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32604Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2881728776041
59944Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53611)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCM
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. 1.0 beta
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/ based on the model GenomeNet Sporulation v. 1
73400Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397839.1StrainInfo: A central database for resolving microbial strain identifiers