Strain identifier
BacDive ID: 389
Type strain: 
Species: Candidimonas nitroreducens
Strain history: <- C. M. Manaia, Escola Superior de Biotecnol., Univ. Católica Portuguesa, Porto, Portugal; SC-089
NCBI tax ID(s): 683354 (species)
version 8.1 (current version)
General
@ref: 18008
BacDive-ID: 389
DSM-Number: 25352
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Candidimonas nitroreducens DSM 25352 is an aerobe, mesophilic bacterium that was isolated from sewage sludge compost.
NCBI tax id
- NCBI tax id: 683354
- Matching level: species
strain history
- @ref: 18008
- history: <- C. M. Manaia, Escola Superior de Biotecnol., Univ. Católica Portuguesa, Porto, Portugal; SC-089
doi: 10.13145/bacdive389.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Candidimonas
- species: Candidimonas nitroreducens
- full scientific name: Candidimonas nitroreducens Vaz-Moreira et al. 2011
@ref: 18008
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Candidimonas
species: Candidimonas nitroreducens
full scientific name: Candidimonas nitroreducens Vaz-Moreira et al. 2011
type strain: no
Morphology
multimedia
- @ref: 18008
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25352.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 18008
- name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18008 | positive | growth | 28 | mesophilic |
| 60742 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 60742
- oxygen tolerance: aerobe
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 60742 C16:0 32.6 16 60742 C18:0 3.6 18 60742 C10:0 2OH 0.8 11.157 60742 C12:0 2OH 1.1 13.178 60742 C12:0 ALDE ? 0.5 10.915 60742 C14:0 3OH/C16:1 ISO I 7 15.485 60742 C16:0 2OH 1.5 17.233 60742 C16:1 ω7c 6.5 15.819 60742 C17:0 CYCLO 26.6 16.888 60742 C18:1 ω7c /12t/9t 9.5 17.824 60742 C18:1 ω9c 1.1 17.769 60742 C18:2 ω6,9c/C18:0 ANTE 3.1 17.724 60742 C19:0 CYCLO ω8c 3.1 18.9 60742 Unidentified 3 18.135 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date | geographic location |
|---|---|---|---|---|---|---|
| 18008 | sewage sludge compost | Portugal | PRT | Europe | ||
| 60742 | Sewage sludge compost | Portugal | PRT | Europe | 2005 | Porto ? |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Engineered | #Waste | #Sewage sludge |
taxonmaps
- @ref: 69479
- File name: preview.99_51441.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_2229;97_12455;98_15319;99_51441&stattab=map
- Last taxonomy: Candidimonas nitroreducens
- 16S sequence: FN556191
- Sequence Identity:
- Total samples: 32
- soil counts: 8
- aquatic counts: 16
- animal counts: 6
- plant counts: 2
Safety information
risk assessment
- @ref: 18008
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18008
- description: Candidimonas nitroreducens partial 16S rRNA gene, type strain SC-089T
- accession: FN556191
- length: 1410
- database: ena
- NCBI tax ID: 683354
External links
@ref: 18008
culture collection no.: DSM 25352, CCUG 55806, LMG 24812
straininfo link
- @ref: 70069
- straininfo: 359548
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20952543 | Candidimonas nitroreducens gen. nov., sp. nov. and Candidimonas humi sp. nov., isolated from sewage sludge compost. | Vaz-Moreira I, Figueira V, Lopes AR, De Brandt E, Vandamme P, Nunes OC, Manaia CM | Int J Syst Evol Microbiol | 10.1099/ijs.0.021188-0 | 2010 | Alcaligenaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sodium Chloride/metabolism, *Soil, Temperature | Metabolism |
| Phylogeny | 27902326 | Caenimicrobium hargitense gen. nov., sp. nov., a new member of the family Alcaligenaceae (Betaproteobacteria) isolated from activated sludge. | Felfoldi T, Schumann P, Mentes A, Keki Z, Mathe I, Toth EM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001674 | 2017 | Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Romania, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18008 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25352) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25352 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 60742 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55806) | https://www.ccug.se/strain?id=55806 | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 70069 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID359548.1 | StrainInfo: A central database for resolving microbial strain identifiers |