Strain identifier
BacDive ID: 3873
Type strain: 
Species: Deinococcus apachensis
Strain Designation: KR-36
Strain history: <- NRRL <-F.A. Rainey; KR-36
NCBI tax ID(s): 1121377 (strain), 309886 (species)
version 8.1 (current version)
General
@ref: 8303
BacDive-ID: 3873
DSM-Number: 19763
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Deinococcus apachensis KR-36 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, sonoran desert.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1121377 | strain |
| 309886 | species |
strain history
- @ref: 8303
- history: <- NRRL <-F.A. Rainey; KR-36
doi: 10.13145/bacdive3873.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus apachensis
- full scientific name: Deinococcus apachensis Rainey and da Costa 2005
@ref: 8303
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus apachensis
full scientific name: Deinococcus apachensis Rainey and da Costa 2005
strain designation: KR-36
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 97.993 | |
| 69480 | 92.505 | no |
Culture and growth conditions
culture medium
- @ref: 8303
- name: DEINOCOCCUS MEDIUM (DSMZ Medium 1306)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1306
- composition: Name: DEINOCOCCUS MEDIUM (DSMZ Medium 1306) Composition: Tryptone 5.0 g/l Yeast extract 2.5 g/l Maltose 1.0 g/l Dextrose 1.0 g/l DL-Methionine 1.0 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l Pyridoxine hydrochloride 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Lipoic acid 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8303 | positive | growth | 28 | mesophilic |
| 60831 | positive | growth | 28-30 | mesophilic |
culture pH
- @ref: 60831
- ability: positive
- type: growth
- pH: 7.2
Physiology and metabolism
oxygen tolerance
- @ref: 60831
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.087
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 8303 | soil, sonoran desert | Arizona | USA | USA | North America |
| 60831 | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_7007.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15362;96_3286;97_4032;98_5147;99_7007&stattab=map
- Last taxonomy: Deinococcus apachensis subclade
- 16S sequence: AY743264
- Sequence Identity:
- Total samples: 286
- soil counts: 70
- aquatic counts: 44
- animal counts: 130
- plant counts: 42
Safety information
risk assessment
- @ref: 8303
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8303
- description: Deinococcus apachensis strain KR-36 16S ribosomal RNA gene, partial sequence
- accession: AY743264
- length: 1457
- database: ena
- NCBI tax ID: 309886
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Deinococcus apachensis DSM 19763 | GCA_000381345 | scaffold | ncbi | 1121377 |
| 66792 | Deinococcus apachensis DSM 19763 | 1121377.3 | wgs | patric | 1121377 |
| 66792 | Deinococcus apachensis DSM 19763 | 2519103012 | draft | img | 1121377 |
GC content
- @ref: 8303
- GC-content: 68.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 74 | no |
| motile | no | 91.37 | no |
| flagellated | no | 96.571 | no |
| gram-positive | yes | 87.937 | no |
| anaerobic | no | 96.49 | yes |
| aerobic | yes | 90.079 | no |
| halophile | no | 92.645 | no |
| spore-forming | no | 88.682 | no |
| thermophile | no | 90.901 | yes |
| glucose-util | yes | 85.356 | no |
| glucose-ferment | no | 90.443 | no |
External links
@ref: 8303
culture collection no.: DSM 19763, LMG 22135, NRRL B-23948, CCUG 56028
straininfo link
- @ref: 73383
- straininfo: 128075
literature
- topic: Phylogeny
- Pubmed-ID: 26297510
- title: Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.
- authors: Kim DU, Lee H, Lee JH, Ahn JH, Lim S, Jeong S, Park SY, Seong CN, Ka JO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000396
- year: 2015
- mesh: Air Conditioning, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Deinococcus/classification, Fatty Acids/analysis, Genotype, Glycolipids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ultraviolet Rays
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8303 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19763) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19763 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 60831 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 56028) | https://www.ccug.se/strain?id=56028 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 73383 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID128075.1 | StrainInfo: A central database for resolving microbial strain identifiers |