Strain identifier
BacDive ID: 3857
Type strain: 
Species: Erythrobacter sanguineus
Strain Designation: RSPS-2a
Strain history: <- M.S. da Costa <- A.C. Ferreira, RSPS-2a
NCBI tax ID(s): 68909 (species)
version 8.1 (current version)
General
@ref: 4289
BacDive-ID: 3857
DSM-Number: 11302
keywords: 16S sequence, Bacteria, thermophilic
description: Erythrobacter sanguineus RSPS-2a is a thermophilic bacterium that was isolated from hot springs.
NCBI tax id
- NCBI tax id: 68909
- Matching level: species
strain history
- @ref: 4289
- history: <- M.S. da Costa <- A.C. Ferreira, RSPS-2a
doi: 10.13145/bacdive3857.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Erythrobacter
- species: Erythrobacter sanguineus
- full scientific name: Erythrobacter sanguineus (Hiraishi et al. 2002 ex Ahrens and Rheinheimer 1967) Xu et al. 2020
synonyms
- @ref: 20215
- synonym: Porphyrobacter sanguineus
@ref: 4289
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus geothermalis
full scientific name: Deinococcus geothermalis Ferreira et al. 1997
strain designation: RSPS-2a
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4289 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 4289 | THERMUS 162 MEDIUM (DSMZ Medium 878) | yes | https://mediadive.dsmz.de/medium/878 | Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4289 | positive | growth | 40 | thermophilic |
| 4289 | positive | growth | 45-50 | thermophilic |
Isolation, sampling and environmental information
isolation
- @ref: 4289
- sample type: hot springs
- geographic location: Sâo Pedro do Sul
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_2804.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15362;96_1491;97_1779;98_2174;99_2804&stattab=map
- Last taxonomy: Deinococcus geothermalis subclade
- 16S sequence: Y13040
- Sequence Identity:
- Total samples: 3020
- soil counts: 339
- aquatic counts: 569
- animal counts: 1857
- plant counts: 255
Safety information
risk assessment
- @ref: 4289
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4289
- description: D.geothermalis 16S rRNA gene, isolate RSPS-2a
- accession: Y13040
- length: 1473
- database: ena
- NCBI tax ID: 68909
External links
@ref: 4289
culture collection no.: DSM 11302
straininfo link
- @ref: 73367
- straininfo: 49072
literature
- topic: Metabolism
- Pubmed-ID: 24323286
- title: Growth of the extremophilic Deinococcus geothermalis DSM 11302 using co-substrate fed-batch culture.
- authors: Bornot J, Molina-Jouve C, Uribelarrea JL, Gorret N
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-013-5397-5
- year: 2013
- mesh: Batch Cell Culture Techniques/*methods, Bioreactors/*microbiology, Carbon/metabolism, Culture Media/chemistry, Deinococcus/*growth & development/*metabolism, Glucose/metabolism, Nitrogen/metabolism, Peptones/metabolism, Temperature
- topic2: Cultivation
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4289 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11302) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11302 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 73367 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49072.1 | StrainInfo: A central database for resolving microbial strain identifiers |