Strain identifier
BacDive ID: 3856
Type strain: 
Species: Deinococcus geothermalis
Strain Designation: AG-5a
Strain history: <- M.S. da Costa, AG-5a
NCBI tax ID(s): 68909 (species)
version 8.1 (current version)
General
@ref: 4288
BacDive-ID: 3856
DSM-Number: 11301
keywords: 16S sequence, Bacteria, thermophilic
description: Deinococcus geothermalis AG-5a is a thermophilic bacterium that was isolated from hot springs.
NCBI tax id
- NCBI tax id: 68909
- Matching level: species
strain history
- @ref: 4288
- history: <- M.S. da Costa, AG-5a
doi: 10.13145/bacdive3856.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus geothermalis
- full scientific name: Deinococcus geothermalis Ferreira et al. 1997
@ref: 4288
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus geothermalis
full scientific name: Deinococcus geothermalis Ferreira et al. 1997
strain designation: AG-5a
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4288 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 4288 | THERMUS 162 MEDIUM (DSMZ Medium 878) | yes | https://mediadive.dsmz.de/medium/878 | Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4288 | positive | growth | 40 | thermophilic |
| 4288 | positive | growth | 45-50 | thermophilic |
Isolation, sampling and environmental information
isolation
- @ref: 4288
- sample type: hot springs
- geographic location: near Naples, Termi di Agnano
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_2804.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15362;96_1491;97_1779;98_2174;99_2804&stattab=map
- Last taxonomy: Deinococcus geothermalis subclade
- 16S sequence: Y13039
- Sequence Identity:
- Total samples: 3020
- soil counts: 339
- aquatic counts: 569
- animal counts: 1857
- plant counts: 255
Safety information
risk assessment
- @ref: 4288
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4288
- description: D.geothermalis 16S rRNA gene, isolate AG-5aT
- accession: Y13039
- length: 1473
- database: ena
- NCBI tax ID: 68909
External links
@ref: 4288
culture collection no.: DSM 11301
straininfo link
- @ref: 73366
- straininfo: 93048
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4288 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11301) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11301 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 73366 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID93048.1 | StrainInfo: A central database for resolving microbial strain identifiers |