General

@ref: 5560

BacDive-ID: 3842

DSM-Number: 14813

keywords: 16S sequence, Bacteria, anaerobe, thermophilic

description: Deferribacter thermophilus BMA is an anaerobe, thermophilic bacterium that was isolated from formation water of oil field at a depth 2058 m.

NCBI tax id

• NCBI tax id: 53573
• Matching level: species

strain history

• @ref: 5560
• history: <- K. Takai, Subground Animalcule Retrieval (SUGAR) Program, Japan Agency for Marine-Earth Science and Technology (JAMSTEC); BMA <- ACM <- A. C. Greene, University of Canberra, Belconnen, Australian Capital Territory, Australia

doi: 10.13145/bacdive3842.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deferribacterota
• domain: Bacteria
• phylum: Deferribacterota
• class: Deferribacteres
• order: Deferribacterales
• family: Deferribacteraceae
• genus: Deferribacter
• species: Deferribacter thermophilus
• full scientific name: Deferribacter thermophilus Greene et al. 1997

@ref: 5560

domain: Bacteria

phylum: Deferribacteres

class: Deferribacteres

order: Deferribacterales

family: Deferribacteraceae

genus: Deferribacter

species: Deferribacter thermophilus

full scientific name: Deferribacter thermophilus Greene et al. 1997

strain designation: BMA

type strain: yes

Culture and growth conditions

culture medium

• @ref: 5560
• name: DEFERRIBACTER MEDIUM (DSMZ Medium 935)
• growth: yes
• link: https://mediadive.dsmz.de/medium/935
• composition: Name: DEFERRIBACTER MEDIUM (DSMZ Medium 935) Composition: NaCl 29.9103 g/l MgCl2 x 6 H2O 4.48654 g/l Yeast extract 1.99402 g/l Na2CO3 1.49551 g/l NH4Cl 0.997009 g/l Na-pyruvate 0.498504 g/l KNO3 0.498504 g/l CaCl2 x 2 H2O 0.378863 g/l K2HPO4 0.0797607 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

• @ref: 5560
• growth: positive
• type: growth
• temperature: 60
• range: thermophilic

Physiology and metabolism

oxygen tolerance

• @ref: 5560
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 5560
• sample type: formation water of oil field at a depth 2058 m
• geographic location: North Sea, Beatrice oil field
• country: United Kingdom
• origin.country: GBR
• continent: Europe

isolation source categories

Safety information

risk assessment

• @ref: 5560
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 5560
• description: Deferribacter thermophilus 16S ribosomal RNA gene, partial sequence
• accession: U75602
• length: 1551
• database: ena
• NCBI tax ID: 53573

GC content

• @ref: 5560
• GC-content: 34
• method: thermal denaturation, midpoint method (Tm)

External links

@ref: 5560

culture collection no.: DSM 14813, ACM 5093

straininfo link

• @ref: 73352
• straininfo: 100622

Reference